View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13381_low_21 (Length: 396)
Name: NF13381_low_21
Description: NF13381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13381_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 17 - 381
Target Start/End: Complemental strand, 54716226 - 54715861
Alignment:
| Q |
17 |
caactttaatttttgttagctttgtttcatagtattaatcaatcaattctgaaattctcaatcaccacaaaacgacaacccaaaagtagcacgcgtagct |
116 |
Q |
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| T |
54716226 |
caactttaatttttgttagctttgtttcatagtattaatcaatcaattctgaaattctcaatcaccacaaaacgacaacccaaaagtagcacgcgtagct |
54716127 |
T |
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| Q |
117 |
actttctcagattccactctctccccttaacagtgccacgtgttcttttt-ccttgtagggtgtcagtgactgcgtccaaacaaacggcaacggaggggt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54716126 |
actttctcagattccactctctccccttaacagtgccacgtgttcttttttccttgtagggtgtcagtgactgcgtccaaacaaacggcaacggaggggt |
54716027 |
T |
|
| Q |
216 |
ccacccacgaaaccctaaaacggcgtcgtcctccaacgacagcctcaccatgacggagcatcaagtggccaagctaatggcagacgacatgggatctgcc |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |
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| T |
54716026 |
ccacccacgaaaccctaaaacggcgtcgtcctccaacgaaagcctcaccatgacggagcatcaagtggccaagctaatggaagaagacatgggatctgcc |
54715927 |
T |
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| Q |
316 |
atgcaatacttaccaggcaacggtctccgcctcatgcgtgtttctcttgctactgcaatctctact |
381 |
Q |
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||||||||||||| |||||| ||||| ||||||||| | |||||||||||||||||||||||||| |
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| T |
54715926 |
atgcaatacttacaaggcaaaggtctttgcctcatgcctatttctcttgctactgcaatctctact |
54715861 |
T |
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