View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13381_low_23 (Length: 379)
Name: NF13381_low_23
Description: NF13381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13381_low_23 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 344; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 10 - 361
Target Start/End: Complemental strand, 1482079 - 1481728
Alignment:
| Q |
10 |
catcatcacataacaaatcaacaaaacaacagaatattaacaacaataacttaattcataatgtaactaacttgtaaaacaaatttagacaatgtttgtc |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1482079 |
catcatcacataacaaatcaacaaaacaacagaatattaacaacaataacttaattcataatgtaactaacttgtaaaacaaatttagacaatgtttgtc |
1481980 |
T |
|
| Q |
110 |
ttattgtgatagaatttagatttgtgaataagattagttagtttagttagatcacaatgtaactaacttgtaactatcttaaacaatattcaactaattt |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1481979 |
ttattgtgatagaatttagatttgtgaatacgattagttagtttagttagatcacaatgtaactaacttgtaactatcttaaacaatattcaactaattt |
1481880 |
T |
|
| Q |
210 |
taacagattatctttagtcatcatgttgagtcactacaaacgacgtagaaaccttgtatactgagcaatttacctgtgaaaacgccttgtatgctatcga |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1481879 |
taacagattatctttagtcatcatgttgagtcactacaaactacgtagaaaccttgtatactgagcaatttacctgtgaaaacgccttgtatgctatcga |
1481780 |
T |
|
| Q |
310 |
gtataacagatatagaaaccagaagagccaagacagtaacgtatttaacaac |
361 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1481779 |
gtataacagatatagaaaccagaagagccaagacagtaacgtatttaacaac |
1481728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 214
Target Start/End: Complemental strand, 34728685 - 34728641
Alignment:
| Q |
169 |
taactaacttgtaactatcttaaacaatattcaactaattttaaca |
214 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||||| ||||| |
|
|
| T |
34728685 |
taactaacatgtaacta-cttaaacaatattcaactaattctaaca |
34728641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 170 - 202
Target Start/End: Original strand, 34893594 - 34893626
Alignment:
| Q |
170 |
aactaacttgtaactatcttaaacaatattcaa |
202 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| |
|
|
| T |
34893594 |
aactagcttgtaactatcttaaacaatattcaa |
34893626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 126; Significance: 7e-65; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 181 - 362
Target Start/End: Complemental strand, 49191238 - 49191057
Alignment:
| Q |
181 |
aactatcttaaacaatattcaactaattttaacagattatctttagtcatcatgttgagtcactacaaacgacgtagaaaccttgtatactgagcaattt |
280 |
Q |
| |
|
|||||||||||||||||||||||||||| || || |||||||||||| |||||||||||||||||||||| || ||||||||||| |||| ||||||||| |
|
|
| T |
49191238 |
aactatcttaaacaatattcaactaattctagcatattatctttagtgatcatgttgagtcactacaaacaacatagaaaccttgcatacggagcaattt |
49191139 |
T |
|
| Q |
281 |
acctgtgaaaacgccttgtatgctatcgagtataacagatatagaaaccagaagagccaagacagtaacgtatttaacaact |
362 |
Q |
| |
|
||||| || ||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||||| |
|
|
| T |
49191138 |
acctgcgagaacgccttgtatgctgtcgagtataacggatatagaaaccagaggagccaagacagtgacgtatttaacaact |
49191057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 86 - 137
Target Start/End: Complemental strand, 49191288 - 49191237
Alignment:
| Q |
86 |
aaacaaatttagacaatgtttgtcttattgtgatagaatttagatttgtgaa |
137 |
Q |
| |
|
||||||| ||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49191288 |
aaacaaacttagagaatgtttgtcttattgtgatagaatttagatttgtgaa |
49191237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 169 - 214
Target Start/End: Complemental strand, 2622073 - 2622028
Alignment:
| Q |
169 |
taactaacttgtaactatcttaaacaatattcaactaattttaaca |
214 |
Q |
| |
|
||||||||| ||||||| |||||||||||||||||||||| ||||| |
|
|
| T |
2622073 |
taactaactcgtaactaccttaaacaatattcaactaattctaaca |
2622028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 214
Target Start/End: Original strand, 4573136 - 4573181
Alignment:
| Q |
169 |
taactaacttgtaactatcttaaacaatattcaactaattttaaca |
214 |
Q |
| |
|
|||||||||| |||||||||||||||||| | ||||||||| |||| |
|
|
| T |
4573136 |
taactaacttataactatcttaaacaatactaaactaatttcaaca |
4573181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 214
Target Start/End: Complemental strand, 37214282 - 37214237
Alignment:
| Q |
169 |
taactaacttgtaactatcttaaacaatattcaactaattttaaca |
214 |
Q |
| |
|
|||||||||| |||||| |||||||||||| ||||||||| ||||| |
|
|
| T |
37214282 |
taactaacttttaactaccttaaacaatatccaactaattctaaca |
37214237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 214
Target Start/End: Complemental strand, 41356668 - 41356623
Alignment:
| Q |
169 |
taactaacttgtaactatcttaaacaatattcaactaattttaaca |
214 |
Q |
| |
|
||||||||||||||| | ||||||||||||||||| |||| ||||| |
|
|
| T |
41356668 |
taactaacttgtaacgaacttaaacaatattcaacgaattctaaca |
41356623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University