View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13381_low_26 (Length: 356)
Name: NF13381_low_26
Description: NF13381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13381_low_26 |
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Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 16 - 316
Target Start/End: Complemental strand, 37028586 - 37028278
Alignment:
| Q |
16 |
ggggacaccaaggtggaagtgagtccaactagctgagtttgaaatattcgactttgcgatctggtctcgacaacatacatatttcaattgaatcttaatt |
115 |
Q |
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| T |
37028586 |
ggggacaccaagatggaagtgagtccaactagctgagtttgaaatattcgactttgcgttctggtctcgacaacatacatattttaattgaatcttaatt |
37028487 |
T |
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| Q |
116 |
cgttatgttgtggcagtctaacatcttccgttagattttaactcttcttagttgtaaaataaaaaataacagttgaagnnnnnnnntattattg---nnn |
212 |
Q |
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| T |
37028486 |
cgccatgttgtggtagtctaacatcttccgttagattttaactcttcttagttgtaaaataaagaataacagttgaagaaaaaaaatattattgtttttt |
37028387 |
T |
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| Q |
213 |
nnnnaagaagccaaaataatttatttattttttaagaaagatgccaaaattatattaaaccatgaagag----atccaaataa-gcataagatattccta |
307 |
Q |
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| T |
37028386 |
taagaagaagccaaaataatttatttattttttaagaaagaagccaaaattatattaaatcatgaagagatccatccaaataaggcataagatattccta |
37028287 |
T |
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| Q |
308 |
agaatgact |
316 |
Q |
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| T |
37028286 |
aggatgact |
37028278 |
T |
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