View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13381_low_29 (Length: 295)
Name: NF13381_low_29
Description: NF13381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13381_low_29 |
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Alignment Details
Target: chr4 (Bit Score: 159; Significance: 1e-84; HSPs: 11)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 14 - 292
Target Start/End: Complemental strand, 5035945 - 5035676
Alignment:
| Q |
14 |
ggcggaagaggaagcagataaaatagcagcagcagaggaaaaccctaagaaaggaaaaagaacaaaaatggcaacagcaacagaagcaacacgttcaaat |
113 |
Q |
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| T |
5035945 |
ggcggcagaggaagcagagaaaatagcagcaacagaggaaaaccctaagaaacgaaaaa---------tgggaacagaaacagaagcaacacgttcaaat |
5035855 |
T |
|
| Q |
114 |
ttaccagaggatttatgggaacacatcttcaaattcctcaacgacgaggaaaacaacaccttcaaccttcctcgtcctgatgggaatctaggtttcaccg |
213 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| ||||| |||| ||||||| |||||||||||||||| ||| |
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| T |
5035854 |
ttaccagaggatttatgggaaaacatcttcaaattcctcaacgacgaggagaacaacacattcaaacttcttcgtcctaatgggaatctaggttttgccg |
5035755 |
T |
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| Q |
214 |
ataacccccgcagaataaggtctctctaccacgtctcaaaacaagatctgtccatcaccaacagtagtttcaggtctct |
292 |
Q |
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| T |
5035754 |
atcacccccgcagaataaagtctctctatcacgtctcagaacaagatatgccaatcacaaacagtagtttcaggtctct |
5035676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 100 - 295
Target Start/End: Complemental strand, 2526003 - 2525808
Alignment:
| Q |
100 |
caacacgttcaaatttaccagaggatttatgggaacacatcttcaaattcctcaacgacgaggaaaacaacaccttcaaccttcctcgtcctgatgggaa |
199 |
Q |
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| T |
2526003 |
caacacgttcatatttaccagaggagttatgggaacacatcttcaaattcctcaacgacgaggacaacaacaccttcaaccttcttcgtcttgatgggaa |
2525904 |
T |
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| Q |
200 |
tctaggttt-caccgataacccccgcagaataaggtctctctaccacgtctcaaaacaagatctgtccatcaccaacagtagtttcaggtctctctc |
295 |
Q |
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| T |
2525903 |
tataggttttcaac-atatccagcgcagaataggaactctctaccacgtctcaaaacaatctctacccatcaccaacggtagtttcagatctctctc |
2525808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 33 - 183
Target Start/End: Complemental strand, 2536801 - 2536654
Alignment:
| Q |
33 |
aaaatagcagcagcagaggaaaaccctaagaaaggaaaaagaacaaaaatggcaacagcaacagaagcaacacgttcaaatttaccagaggatttatggg |
132 |
Q |
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||||||| |||||||| | ||||||||| |||| |||||||||||||| | ||||||||||| ||||||||||| ||||||||||||| ||||||| |
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| T |
2536801 |
aaaatagaagcagcagtgaaaaaccctaggaaacgaaaaagaacaaaattttcaacagcaacac---caacacgttcatatttaccagaggagttatggg |
2536705 |
T |
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| Q |
133 |
aacacatcttcaaattcctcaacgacgaggaaaacaacaccttcaaccttc |
183 |
Q |
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| T |
2536704 |
aatacatcttcaaatttctcaaccacgaggacagcaacaccttcagccttc |
2536654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 40 - 157
Target Start/End: Complemental strand, 2486547 - 2486430
Alignment:
| Q |
40 |
cagcagcagaggaaaaccctaagaaaggaaaaagaacaaaaatggcaacagcaacagaagcaacacgttcaaatttaccagaggatttatgggaacacat |
139 |
Q |
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|||| |||| |||||||| ||||||| |||||||||||||||||||||||||||||||||||||| | || |||| |||||||| |||||||| | || |
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| T |
2486547 |
cagccgcagcggaaaaccataagaaacgaaaaagaacaaaaatggcaacagcaacagaagcaacatgctcgtatttcccagaggaattatgggagcgaat |
2486448 |
T |
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| Q |
140 |
cttcaaattcctcaacga |
157 |
Q |
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||| |||||||||||||| |
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| T |
2486447 |
ctttaaattcctcaacga |
2486430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 100 - 179
Target Start/End: Complemental strand, 2491320 - 2491241
Alignment:
| Q |
100 |
caacacgttcaaatttaccagaggatttatgggaacacatcttcaaattcctcaacgacgaggaaaacaacaccttcaac |
179 |
Q |
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||||||||||| |||||||||| | ||||||||||||||| |||||||||| ||||||||||| ||||||| ||||||| |
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| T |
2491320 |
caacacgttcatgtttaccagagaagttatgggaacacatcctcaaattcctgaacgacgaggacaacaacatcttcaac |
2491241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 106 - 158
Target Start/End: Original strand, 2625296 - 2625348
Alignment:
| Q |
106 |
gttcaaatttaccagaggatttatgggaacacatcttcaaattcctcaacgac |
158 |
Q |
| |
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||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
2625296 |
gttcagatttaccagaggagttatgggaacacatcttcaaattcctcaacgac |
2625348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 52 - 162
Target Start/End: Complemental strand, 2519473 - 2519366
Alignment:
| Q |
52 |
aaaaccctaagaaaggaaaaagaacaaaaatggcaacagcaacagaagcaacacgttcaaatttaccagaggatttatgggaacacatcttcaaattcct |
151 |
Q |
| |
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|||||||||||||| ||||||||||||||||||| ||||| || || || ||||| ||||||| ||||| |||||||| | ||| |||| ||||| |
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| T |
2519473 |
aaaaccctaagaaaccaaaaagaacaaaaatggcagcagcagcaa---catcatgttcatatttaccggaggagttatgggagcgcattgtcaagttcct |
2519377 |
T |
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| Q |
152 |
caacgacgagg |
162 |
Q |
| |
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||||||||||| |
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| T |
2519376 |
caacgacgagg |
2519366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 99 - 158
Target Start/End: Complemental strand, 2467738 - 2467679
Alignment:
| Q |
99 |
gcaacacgttcaaatttaccagaggatttatgggaacacatcttcaaattcctcaacgac |
158 |
Q |
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|||||| ||||| |||||||| |||| |||||||| | |||||||||||||||||||||| |
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| T |
2467738 |
gcaacatgttcatatttaccaaaggagttatgggagcgcatcttcaaattcctcaacgac |
2467679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 99 - 160
Target Start/End: Original strand, 5101944 - 5102005
Alignment:
| Q |
99 |
gcaacacgttcaaatttaccagaggatttatgggaacacatcttcaaattcctcaacgacga |
160 |
Q |
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|||||| ||||| ||||||| || || |||||||| | |||||||||||||||||||||||| |
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| T |
5101944 |
gcaacaggttcatatttaccggatgagttatgggagcgcatcttcaaattcctcaacgacga |
5102005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 154
Target Start/End: Complemental strand, 2547655 - 2547613
Alignment:
| Q |
112 |
atttaccagaggatttatgggaacacatcttcaaattcctcaa |
154 |
Q |
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|||||||||| || |||||||| |||||||||||||||||||| |
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| T |
2547655 |
atttaccagatgagttatgggagcacatcttcaaattcctcaa |
2547613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 151
Target Start/End: Original strand, 2380052 - 2380097
Alignment:
| Q |
106 |
gttcaaatttaccagaggatttatgggaacacatcttcaaattcct |
151 |
Q |
| |
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|||||||||||||||| || ||||||||| ||||| |||||||||| |
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| T |
2380052 |
gttcaaatttaccagatgagttatgggaatacatcatcaaattcct |
2380097 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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