View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13381_low_31 (Length: 256)
Name: NF13381_low_31
Description: NF13381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13381_low_31 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 33440114 - 33439859
Alignment:
| Q |
1 |
ccatcagttgagagatgaacaaaaggataaagattgttttcttcaaggtctgaagtttcatagagaaatggaaagaaatagggttttagaggtctttggc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33440114 |
ccatcagttgagagatgaacaaaaggataaagattgttttcttcaaggtctgaagtttcatagagaaatggaaagaaatagggttttagaggtctttggc |
33440015 |
T |
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| Q |
101 |
cttctattcttgggaggtactcatagctaaatgctctacgtcctcctactacaatgaaatctccatttgcaaggattacttgagttccatacctaaaatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33440014 |
cttctattcttgggaggtactcatagctaaatgctctacgtcctcctactacaatgaaatctccatttgcaaggattacttgagttccatacctaaaatg |
33439915 |
T |
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| Q |
201 |
nnnnnnnntatataaaacattgaagcatcgggctagcaaaagcgaagcaaaaaaca |
256 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33439914 |
aaaaaaaaaatataaaacattgaagcatcgggctagcaaaagcgaagcaaaaaaca |
33439859 |
T |
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