View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13381_low_33 (Length: 240)

Name: NF13381_low_33
Description: NF13381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13381_low_33
NF13381_low_33
[»] chr4 (3 HSPs)
chr4 (13-158)||(33813490-33813634)
chr4 (180-221)||(33813631-33813672)
chr4 (138-221)||(40841204-40841285)
[»] chr5 (2 HSPs)
chr5 (123-221)||(12024452-12024550)
chr5 (13-63)||(11736288-11736338)
[»] chr1 (1 HSPs)
chr1 (123-212)||(34988478-34988567)
[»] chr8 (1 HSPs)
chr8 (14-67)||(42944234-42944287)
[»] chr3 (3 HSPs)
chr3 (15-67)||(25986604-25986656)
chr3 (14-66)||(54158650-54158702)
chr3 (14-62)||(48192825-48192873)
[»] chr7 (1 HSPs)
chr7 (126-221)||(43895393-43895488)


Alignment Details
Target: chr4 (Bit Score: 96; Significance: 3e-47; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 13 - 158
Target Start/End: Original strand, 33813490 - 33813634
Alignment:
Q  13 atgaagaacaggggcatttctatcaataattttaaactaggggcagacatatcaannnnnnnggtaataggggcagnnnnnnnttcaaaatggggaccag 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||       |||||||| ||||||||    
T  33813490 atgaagaacaggggcatttctatcaataattttaaactaggggcagacatatcaatttttttggtaataggggcagaaaaaaattcaaaat-gggaccag 33813588  T
Q  113 gatatgctgccacacagtttcacatagttttgatttgtgaccattg 158  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  33813589 gatatgctgccacacagtttcacatagttttgatttgtgaccattg 33813634  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 180 - 221
Target Start/End: Original strand, 33813631 - 33813672
Alignment:
Q  180 attgtaattttatcaaaccatccaatagctgaaataaaaact 221  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  33813631 attgtaattttatcaaaccatccaatagctgaaataaaaact 33813672  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 221
Target Start/End: Original strand, 40841204 - 40841285
Alignment:
Q  138 agttttgatttgtgaccattggatctttattggcacagtactattgtaattttatcaaaccatccaatagctgaaataaaaact 221  Q
    |||||||| || ||||||||| |||||||||| |   ||| |||| |||||||||||||||||| ||| |||||||||||||||    
T  40841204 agttttgaattatgaccattgaatctttattgactg-gtattattataattttatcaaaccatctaat-gctgaaataaaaact 40841285  T

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Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 123 - 221
Target Start/End: Complemental strand, 12024550 - 12024452
Alignment:
Q  123 cacacagtttcacatagttttgatttgtgaccattggatctttattggcacagtactattgtaattttatcaaaccatccaatagctgaaataaaaact 221  Q
    ||||||||||||||  ||||| | ||||||||||||||||||||||||||   |||||||||||| |||||||| |||||||| |||||||| ||||||    
T  12024550 cacacagtttcacactgttttaaattgtgaccattggatctttattggcatgatactattgtaatattatcaaatcatccaatggctgaaatgaaaact 12024452  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 63
Target Start/End: Original strand, 11736288 - 11736338
Alignment:
Q  13 atgaagaacaggggcatttctatcaataattttaaactaggggcagacata 63  Q
    |||||||| | ||||| || ||||||||||||| |||||||||||||||||    
T  11736288 atgaagaaaaagggcaattgtatcaataattttgaactaggggcagacata 11736338  T

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Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 123 - 212
Target Start/End: Original strand, 34988478 - 34988567
Alignment:
Q  123 cacacagtttcacatagttttgatttgtgaccattggatctttattggcacagtactattgtaattttatcaaaccatccaatagctgaa 212  Q
    |||||||||||||| |||||||| ||||||||||||||||||||||||||  | |||||| || | ||||||||||||||||| ||||||    
T  34988478 cacacagtttcacaaagttttgaattgtgaccattggatctttattggcatgggactattatagtattatcaaaccatccaatggctgaa 34988567  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 14 - 67
Target Start/End: Original strand, 42944234 - 42944287
Alignment:
Q  14 tgaagaacaggggcatttctatcaataattttaaactaggggcagacatatcaa 67  Q
    |||||||||||||||||| |||||||| |||| |||||||||||||||||||||    
T  42944234 tgaagaacaggggcatttgtatcaatagttttcaactaggggcagacatatcaa 42944287  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 67
Target Start/End: Complemental strand, 25986656 - 25986604
Alignment:
Q  15 gaagaacaggggcatttctatcaataattttaaactaggggcagacatatcaa 67  Q
    |||||||||||||| || ||||||||||||| |||||||||||||||||||||    
T  25986656 gaagaacaggggcaattgtatcaataattttcaactaggggcagacatatcaa 25986604  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 66
Target Start/End: Original strand, 54158650 - 54158702
Alignment:
Q  14 tgaagaacaggggcatttctatcaataattttaaactaggggcagacatatca 66  Q
    ||||||||| |||||||| || |||||||||| || |||||||||||||||||    
T  54158650 tgaagaacaagggcatttttaacaataattttgaaataggggcagacatatca 54158702  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 62
Target Start/End: Complemental strand, 48192873 - 48192825
Alignment:
Q  14 tgaagaacaggggcatttctatcaataattttaaactaggggcagacat 62  Q
    |||| ||||||| ||||| ||||||||||||| |||||| |||||||||    
T  48192873 tgaacaacagggacatttttatcaataattttgaactagtggcagacat 48192825  T

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Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 126 - 221
Target Start/End: Original strand, 43895393 - 43895488
Alignment:
Q  126 acagtttcacatagttttgatttgtgaccattggatctttattggcacagtactattgtaattttatcaaaccatccaatagctgaaataaaaact 221  Q
    ||||||||||| |||||||| || |||| ||||||| |||||||| |  |||||||| |||| | ||||||||||||| | |||||||| ||||||    
T  43895393 acagtttcacacagttttgaattatgactattggatttttattggtatggtactattataatatcatcaaaccatccactggctgaaatgaaaact 43895488  T

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