View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13381_low_35 (Length: 206)
Name: NF13381_low_35
Description: NF13381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13381_low_35 |
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Alignment Details
Target: chr4 (Bit Score: 149; Significance: 7e-79; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 22 - 185
Target Start/End: Original strand, 28595704 - 28595868
Alignment:
| Q |
22 |
aaaacttggaagaagagactctaccattgctagtaaaa-gtttggccaattcagaccttccaaaatttacagatgatctaacaactcttatatcccattt |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
28595704 |
aaaacttggaagaagagactctaccattgctagtaaaaagtttggccaattcagaccttccaaaatttacagatgatctaacaactctaatatcccattt |
28595803 |
T |
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| Q |
121 |
taccaataaaggtcttactctcaaagatatggtgactttatctggtaagttcatcactaacccat |
185 |
Q |
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| T |
28595804 |
taccaataaaggtcttactctcaaagatatggttactttatctggtaagttcatcactaacccat |
28595868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 22 - 185
Target Start/End: Original strand, 32493925 - 32494088
Alignment:
| Q |
22 |
aaaacttggaagaagagactctaccattgctagtaaaagtttggccaattcagaccttccaaaatttacagatgatctaacaactcttatatcccatttt |
121 |
Q |
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|||||| |||||||||||||| ||| ||||||| |||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |
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| T |
32493925 |
aaaactcggaagaagagactccaccgttgctagcaaaagtcaggccaattcagaccttccaaaatttacggatgatctaacaactcttatagcccatttt |
32494024 |
T |
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| Q |
122 |
accaataaaggtcttactctcaaagatatggtgactttatctggtaagttcatcactaacccat |
185 |
Q |
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| T |
32494025 |
accaataaaggtcttactctcaaagatatggttactttatctggtaagttcatcactgacccat |
32494088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 22 - 122
Target Start/End: Complemental strand, 28587183 - 28587083
Alignment:
| Q |
22 |
aaaacttggaagaagagactctaccattgctagtaaaagtttggccaattcagaccttccaaaatttacagatgatctaacaactcttatatcccatttt |
121 |
Q |
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|||||||||||||||||||||||| | || || ||||||||||||||| | |||||||| ||||||||| ||||| |||||||||||||| |||||| |
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| T |
28587183 |
aaaacttggaagaagagactctacaacagcaagcaaaagtttggccaataccgaccttccgttatttacagacgatcttacaactcttatatctcatttt |
28587084 |
T |
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| Q |
122 |
a |
122 |
Q |
| |
|
| |
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|
| T |
28587083 |
a |
28587083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 122
Target Start/End: Complemental strand, 28592281 - 28592181
Alignment:
| Q |
22 |
aaaacttggaagaagagactctaccattgctagtaaaagtttggccaattcagaccttccaaaatttacagatgatctaacaactcttatatcccatttt |
121 |
Q |
| |
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|||||||||| | ||||||||||||| || || ||||||||||||||| | |||||||| |||||| || ||||| |||||||||||||| |||||| |
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| T |
28592281 |
aaaacttggacggagagactctaccacagcaagcaaaagtttggccaatactgaccttccgttatttacggacgatcttacaactcttatatctcatttt |
28592182 |
T |
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| Q |
122 |
a |
122 |
Q |
| |
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| |
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|
| T |
28592181 |
a |
28592181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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