View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13381_low_36 (Length: 206)
Name: NF13381_low_36
Description: NF13381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13381_low_36 |
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Alignment Details
Target: chr6 (Bit Score: 130; Significance: 1e-67; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 130; E-Value: 1e-67
Query Start/End: Original strand, 17 - 189
Target Start/End: Complemental strand, 30903848 - 30903675
Alignment:
| Q |
17 |
caaaggcttaccaaatgtaagagcagtagatgcggaaacagccggagttgaagccttgttagcaaaagaagtagtcaaaccacttgatgtcgagcttcct |
116 |
Q |
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| T |
30903848 |
caaaggcttaccgaatgtaagagcagtagatgcggaaatagccggagttgaagccttgttagcaaaagaagtagtcgaagcacttgatgccgagcttcct |
30903749 |
T |
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| Q |
117 |
agaacaccaaaacccacaaaccatgtataaaa-gaaggcttagaaggatatagaaagaaaggcttagaagtata |
189 |
Q |
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| T |
30903748 |
acaacaccaaaacccacaaaccatttaaaaaaggaaggcttagaaggatatagaaagaaagggttagaagtata |
30903675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 129; Significance: 6e-67; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 17 - 189
Target Start/End: Complemental strand, 25152940 - 25152769
Alignment:
| Q |
17 |
caaaggcttaccaaatgtaagagcagtagatgcggaaacagccggagttgaagccttgttagcaaaagaagtagtcaaaccacttgatgtcgagcttcct |
116 |
Q |
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||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||| |
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| T |
25152940 |
caaaggcttactgaatgtaagagcagtagatgcggaaatagccggagttgaagccttgttagcaaaagaagtagtcgaatcacttgatctcgagcttcct |
25152841 |
T |
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| Q |
117 |
agaacaccaaaacccacaaaccatgtataaaagaaggcttagaaggatatagaaagaaaggcttagaagtata |
189 |
Q |
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| ||||||||||||||||||||||||| |||||||||||||||||||||| |||| ||||||||||||||||| |
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| T |
25152840 |
acaacaccaaaacccacaaaccatgtaaaaaagaaggcttagaaggatatggaaa-aaaggcttagaagtata |
25152769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 21 - 82
Target Start/End: Original strand, 15910898 - 15910959
Alignment:
| Q |
21 |
ggcttaccaaatgtaagagcagtagatgcggaaacagccggagttgaagccttgttagcaaa |
82 |
Q |
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||||||||||||||||||||||| ||||| ||||||||||||||||||| ||| |||||||| |
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| T |
15910898 |
ggcttaccaaatgtaagagcagtggatgctgaaacagccggagttgaagtcttattagcaaa |
15910959 |
T |
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