View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13381_low_4 (Length: 653)

Name: NF13381_low_4
Description: NF13381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13381_low_4
NF13381_low_4
[»] chr2 (46 HSPs)
chr2 (13-363)||(10335047-10335397)
chr2 (342-639)||(10335412-10335706)
chr2 (101-421)||(10347139-10347459)
chr2 (515-634)||(10347490-10347606)
chr2 (172-363)||(10371291-10371481)
chr2 (130-304)||(7116578-7116745)
chr2 (496-634)||(10352804-10352954)
chr2 (129-296)||(9061748-9061909)
chr2 (243-423)||(10352622-10352797)
chr2 (334-423)||(9066076-9066165)
chr2 (128-235)||(9068675-9068778)
chr2 (334-414)||(12019338-12019418)
chr2 (516-621)||(10371565-10371666)
chr2 (312-423)||(11987930-11988042)
chr2 (350-423)||(12012992-12013065)
chr2 (129-205)||(9326854-9326929)
chr2 (348-419)||(9291550-9291621)
chr2 (129-191)||(9291409-9291470)
chr2 (346-423)||(9364227-9364304)
chr2 (131-191)||(8574134-8574193)
chr2 (36-84)||(10347050-10347098)
chr2 (129-235)||(9295294-9295401)
chr2 (13-86)||(8574251-8574324)
chr2 (130-167)||(10340887-10340924)
chr2 (37-86)||(10371176-10371225)
chr2 (582-634)||(7115966-7116018)
chr2 (14-86)||(9061965-9062037)
chr2 (582-634)||(9328392-9328444)
chr2 (571-634)||(8573823-8573886)
chr2 (380-419)||(10341043-10341082)
chr2 (348-423)||(8573971-8574048)
chr2 (129-206)||(9284883-9284958)
chr2 (350-416)||(12006543-12006609)
chr2 (548-634)||(9291675-9291767)
chr2 (13-86)||(10351480-10351552)
chr2 (582-634)||(9315812-9315864)
chr2 (129-209)||(9319012-9319091)
chr2 (582-634)||(9320775-9320827)
chr2 (574-634)||(10341134-10341194)
chr2 (348-423)||(9320583-9320658)
chr2 (171-288)||(9272144-9272264)
chr2 (582-632)||(12006417-12006467)
chr2 (565-631)||(9065914-9065977)
chr2 (582-634)||(9274293-9274345)
chr2 (13-81)||(9291284-9291352)
chr2 (379-423)||(9315662-9315706)
[»] chr3 (1 HSPs)
chr3 (140-423)||(37461880-37462157)
[»] chr4 (3 HSPs)
chr4 (496-579)||(26574590-26574672)
chr4 (349-423)||(26574509-26574583)
chr4 (101-167)||(26574394-26574461)
[»] scaffold0667 (2 HSPs)
scaffold0667 (129-232)||(2008-2109)
scaffold0667 (348-421)||(4057-4130)
[»] chr1 (6 HSPs)
chr1 (334-423)||(29422911-29423000)
chr1 (340-415)||(29443774-29443849)
chr1 (334-419)||(29453744-29453829)
chr1 (334-365)||(29468278-29468309)
chr1 (549-603)||(29443634-29443688)
chr1 (549-598)||(29468098-29468147)
[»] chr8 (2 HSPs)
chr8 (348-419)||(41967181-41967252)
chr8 (36-86)||(41968184-41968234)


Alignment Details
Target: chr2 (Bit Score: 302; Significance: 1e-169; HSPs: 46)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 302; E-Value: 1e-169
Query Start/End: Original strand, 13 - 363
Target Start/End: Original strand, 10335047 - 10335397
Alignment:
Q  13 aatatcacaaaagaatgttcgataaaaaaccatgtttttgaaaggaactatgtacaaatttggagtaatttcatcttctctttattaaatacacagatat 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10335047 aatatcacaaaagaatgttcgataaaaaaccatgtttttgaaaggaactatgtacaaatttggagtaatttcatcttctctttattaaatacacagatat 10335146  T
Q  113 caaaccactgcaggtagaatagtctcaacattcagaaataagcttgtcaaaataaattatttaggagtgaagatctcaaacaataaatgaaaaagaacaa 212  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10335147 caaaccaatgcaggtagaatagtctcaacattcagaaataagcttgtcaaaataaattatttaggagtgaagatctcaaacaataaatgaaaaagaacaa 10335246  T
Q  213 cgattcataccacaattctttctataagcagcaaattctttaactagtcacaaggtcaactctaaaactaacacaaagcatacattgtggtcnnnnnnng 312  Q
    |||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |||||||||||| |||       |    
T  10335247 cgattcataccacaattctttctataagcagcaaattcttaagctagtcacaaggtcaactctaaaactaacacatagcatacattgttgtctttttttg 10335346  T
Q  313 tttctttggaaatcagcgtagacacattgtcaaatacatatacataaacaa 363  Q
    |||||||||||||| || |||||||||||||||||||||||||||||||||    
T  10335347 tttctttggaaatcggcatagacacattgtcaaatacatatacataaacaa 10335397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 342 - 639
Target Start/End: Original strand, 10335412 - 10335706
Alignment:
Q  342 tcaaatacatatacataaacaaaggtaacgactccagagtaattagagaatcctcatcctatgataagaattcaatttgaccactttgttaaatcagaac 441  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10335412 tcaaatacatatacataaacaaaggtaacgactccagagtaattagagaatcctcatcctatgataagaattcaatttgaccactttgttaaatcagaac 10335511  T
Q  442 tatcaaactactaaatttggttaaatcgtgtttcaattaaatcagcacaatagaatagagtttaaggtcaaaggtccattgaactgatataacttatacg 541  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||     
T  10335512 tatcaaactactaaatttggttaaatcgtgtttcaattaaatcagcacaatataatagagtttaaggtcaaaggtccattgaactgatataacttatac- 10335610  T
Q  542 caacaacaaaaactcagttaaacaataagaagtaccttcccttgcttgtacgattctgcttcttcctacgattatcaacaggtaaggaaggtgaaaca 639  Q
      |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10335611 --acaacaaaaactcagtcaaacaataagaagtaccttcccttgcttgtacgattctgcttcttcctacgattatcaacaggtaaggaaggtgaaaca 10335706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 101 - 421
Target Start/End: Original strand, 10347139 - 10347459
Alignment:
Q  101 atacacagatatcaaaccactgcagg-tagaatagtctcaacattcagaaataagcttgtcaaaataaattatttaggagtgaagatctcaaacaataaa 199  Q
    ||||||||| ||||| |||| | ||| |||||||||||||||||||| ||||||||||||||||||||  | ||||||||||||| ||||||||||||||    
T  10347139 atacacagaaatcaagccacagtagggtagaatagtctcaacattcaaaaataagcttgtcaaaataaggt-tttaggagtgaaggtctcaaacaataaa 10347237  T
Q  200 tgaaaaagaacaacgattcataccacaattctttctataagcagcaaattctttaactagtcacaaggtcaactctaaaactaacacaaagcatacattg 299  Q
    |||||||||| ||| |||||||||| |||||||||| | |  || |||||||||| |||||| |||| |||||||| ||||||||||| |||||||||||    
T  10347238 tgaaaaagaataacaattcataccaaaattctttctttta--agaaaattctttagctagtcccaagctcaactcttaaactaacacatagcatacattg 10347335  T
Q  300 tggtc-nnnnnnngtttctttggaaatc-agcgtagacacattgtcaaatacatatacataaacaaaggtaacgactccagagtaattagagaatcctc- 396  Q
    | |||        ||||||||  ||| | ||| || | ||||||||||||||||| |||||||| ||||||| |||| || |||||||||| ||| |||     
T  10347336 ttgtcaactttttgtttcttttaaaagcaagcatatagacattgtcaaatacataaacataaac-aaggtaaagacttcaaagtaattagaaaatactct 10347434  T
Q  397 atcctatgataagaattcaatttga 421  Q
    |||||||||||||||||||||||||    
T  10347435 atcctatgataagaattcaatttga 10347459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 515 - 634
Target Start/End: Original strand, 10347490 - 10347606
Alignment:
Q  515 gtccattgaactgatataacttatacgcaacaacaaaaactcagttaaacaataagaagtaccttcccttgcttgtacgattctgcttcttcctacgatt 614  Q
    ||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||| |||||||| | |||||| |||||||||||||||    
T  10347490 gtccattgaactgatataacttatac---acaacaaaaactcagttaaacaataagaagtaccttctcttgcttggatgattctccttcttcctacgatt 10347586  T
Q  615 atcaacaggtaaggaaggtg 634  Q
    ||||||||| ||||||||||    
T  10347587 atcaacagggaaggaaggtg 10347606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 172 - 363
Target Start/End: Original strand, 10371291 - 10371481
Alignment:
Q  172 tttaggagtgaagatctcaaacaataaatgaaaaagaacaacgattcataccacaattctttctataagcagcaaattctttaactagtcacaaggtcaa 271  Q
    ||||||||||||||||| ||||||||| |||||||||| ||| |||||||||| |||||||||| ||   ||||||||||||| ||||||| ||| ||||    
T  10371291 tttaggagtgaagatctgaaacaataactgaaaaagaataacaattcataccaaaattctttcttta---agcaaattctttagctagtcataagctcaa 10371387  T
Q  272 ctctaaaactaacacaaagcatacattgtggtc-nnnnnnngtttctttggaaatc-agcgtagacacattgtcaaatacatatacataaacaa 363  Q
    |||| ||||||||||| | |||||| ||| |||        |||||||| |||||| ||| || ||||||||||||||||||| ||||||||||    
T  10371388 ctcttaaactaacacacatcatacactgttgtcaattttttgtttcttttgaaatcaagcatatacacattgtcaaatacataaacataaacaa 10371481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 130 - 304
Target Start/End: Complemental strand, 7116745 - 7116578
Alignment:
Q  130 aatagtctcaacattcagaaataagcttgtcaaaataaattatttaggagtgaagatctcaaacaataaatgaaaaagaacaacgattcataccacaatt 229  Q
    |||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||||||| ||| || ||||   |||||| |||||||||| |||     
T  7116745 aatagtctcaacattcagaaatgagcttgccaaaataa-ttatttaggagtgaagatctcaaataatgaaggaaa---aacaacaattcataccaaaata 7116650  T
Q  230 ctttctataagcagcaaattctttaactagtcacaaggtcaactctaaaactaacacaaagcatacattgtggtc 304  Q
    | || | ||   | |||||| | || |||| ||||||||||||||| || |||||||| ||||||||||||||||    
T  7116649 cgttattta---atcaaattatatagctagacacaaggtcaactcttaagctaacacatagcatacattgtggtc 7116578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 496 - 634
Target Start/End: Original strand, 10352804 - 10352954
Alignment:
Q  496 atagagtttaaggtcaaaggtccattgaactgatataacttatac------gcaacaacaaaaactcagttaaacaataagaagtacctt------ccct 583  Q
    ||||||||||| ||||||||||||| |||||||||||||||||||       ||||||||| ||||||||||||||||||||||||||||      | ||    
T  10352804 atagagtttaatgtcaaaggtccatcgaactgatataacttatacacaacaacaacaacaacaactcagttaaacaataagaagtaccttttctcgctct 10352903  T
Q  584 tgcttgtacgattctgcttcttcctacgattatcaacaggtaaggaaggtg 634  Q
     ||||||| |||||| || ||||||||||||||||||||| ||| ||||||    
T  10352904 cgcttgtaggattctcctgcttcctacgattatcaacagggaagtaaggtg 10352954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 129 - 296
Target Start/End: Complemental strand, 9061909 - 9061748
Alignment:
Q  129 gaatagtctcaacattcagaaataagcttgtcaaaataaattatttaggagtgaagatctcaaacaataaatgaaaaagaacaacgattcataccacaat 228  Q
    |||||||||| ||||||||||||||| | | |||||||| ||||||||||||||| |||||||||||| ||||||| | ||  |  |||||||||| |||    
T  9061909 gaatagtctccacattcagaaataagttggccaaaataa-ttatttaggagtgaaaatctcaaacaatgaatgaaacaaaagca--attcataccaaaat 9061813  T
Q  229 tctttctataagcagcaaattctttaactagtcacaaggtcaactctaaaactaacacaaagcataca 296  Q
    || |||| |||| |   ||||||||| |||||||||||||||||||  ||||||| ||| ||||||||    
T  9061812 tcgttctttaagta---aattctttatctagtcacaaggtcaactcctaaactaaaacatagcataca 9061748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 243 - 423
Target Start/End: Original strand, 10352622 - 10352797
Alignment:
Q  243 gcaaattctttaactagtcacaaggtcaactc-taaaactaacacaaagcatacattgtggtcnnnnnnngtttctttggaaatca-gcgtagacacatt 340  Q
    |||||||||||| | | ||||||||||||||| |||||| |||||| |||||||||||| |||       |||||||| ||||| | || || |||||||    
T  10352622 gcaaattctttagcaactcacaaggtcaactcctaaaac-aacacatagcatacattgttgtctttttttgtttcttttgaaataaagcatacacacatt 10352720  T
Q  341 gtcaaatacatatacataaacaaaggtaacgactccagagtaattagagaatcctcatcctatgataagaattcaatttgacc 423  Q
    ||||      ||||||||||||||||||| |||  || ||||||||||||||||| |||||||||||||||||||||||||||    
T  10352721 gtca------tatacataaacaaaggtaaagacgtcaaagtaattagagaatccttatcctatgataagaattcaatttgacc 10352797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 334 - 423
Target Start/End: Complemental strand, 9066165 - 9066076
Alignment:
Q  334 acacattgtcaaatacatatacataaacaaaggtaacgactccagagtaattagagaatcctcatcctatgataagaattcaatttgacc 423  Q
    |||||||||||||||||| ||||||||||||||||   ||| || ||||||||||||||| | |||||||||||||| ||||||||||||    
T  9066165 acacattgtcaaatacatgtacataaacaaaggtagaaacttcaaagtaattagagaatctttatcctatgataagacttcaatttgacc 9066076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 128 - 235
Target Start/End: Complemental strand, 9068778 - 9068675
Alignment:
Q  128 agaatagtctcaacattcagaaataagcttgtcaaaataaattatttaggagtgaagatctcaaacaataaatgaaaaagaacaacgattcataccacaa 227  Q
    ||||||| ||||||||||||||||||||||||||| || ||||||||||||| |||||||||||| ||| ||||||||| | ||   |||||||||| ||    
T  9068778 agaataggctcaacattcagaaataagcttgtcaagat-aattatttaggagcgaagatctcaaagaatgaatgaaaaaaagca---attcataccaaaa 9068683  T
Q  228 ttctttct 235  Q
    ||||||||    
T  9068682 ttctttct 9068675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 334 - 414
Target Start/End: Complemental strand, 12019418 - 12019338
Alignment:
Q  334 acacattgtcaaatacatatacataaacaaaggtaacgactccagagtaattagagaatcctcatcctatgataagaattc 414  Q
    |||||||||||||||||||||||||||||||||||  |||| || |||||||||||||||||  |||||| ||||||||||    
T  12019418 acacattgtcaaatacatatacataaacaaaggtagagacttcaaagtaattagagaatccttgtcctataataagaattc 12019338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 516 - 621
Target Start/End: Original strand, 10371565 - 10371666
Alignment:
Q  516 tccattgaactgatat-aacttatacgcaacaacaaaaactcagttaaacaataagaagtaccttcccttgcttgtacgattctgcttcttcctacgatt 614  Q
    |||||||||||||||| |||||||||   ||||||||||||||||||||  | || |||||||||| |||||||||| |||||| ||||||||||| |||    
T  10371565 tccattgaactgatattaacttatac---acaacaaaaactcagttaaa--acaataagtaccttctcttgcttgtatgattctccttcttcctaccatt 10371659  T
Q  615 atcaaca 621  Q
    |||||||    
T  10371660 atcaaca 10371666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 312 - 423
Target Start/End: Complemental strand, 11988042 - 11987930
Alignment:
Q  312 gtttctttggaaatca-gcgtagacacattgtcaaatacatatacataaacaaaggtaacgactccagagtaattagagaatcctcatcctatgataaga 410  Q
    |||||||| ||||||| || || | ||||||||||||| |||||||||||||||||||  |||| || |||||||||| ||||||  |||||| ||| ||    
T  11988042 gtttcttttgaaatcaagcatacagacattgtcaaatatatatacataaacaaaggtagagacttcaaagtaattagaaaatccttgtcctataatagga 11987943  T
Q  411 attcaatttgacc 423  Q
    |||||||||||||    
T  11987942 attcaatttgacc 11987930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 350 - 423
Target Start/End: Complemental strand, 12013065 - 12012992
Alignment:
Q  350 atatacataaacaaaggtaacgactccagagtaattagagaatcctcatcctatgataagaattcaatttgacc 423  Q
    |||||||||||||||||||  |||| || |||||||||||||||||  |||||| |||||||||||||||||||    
T  12013065 atatacataaacaaaggtagagacttcaaagtaattagagaatccttgtcctataataagaattcaatttgacc 12012992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 129 - 205
Target Start/End: Original strand, 9326854 - 9326929
Alignment:
Q  129 gaatagtctcaacattcagaaataagcttgtcaaaataaattatttaggagtgaagatctcaaacaataaatgaaaa 205  Q
    |||||||||||||||||||||||||| | || |||| |||||||||||||||||| |||||||||||| ||| ||||    
T  9326854 gaatagtctcaacattcagaaataagttggtaaaaa-aaattatttaggagtgaaaatctcaaacaatgaataaaaa 9326929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 348 - 419
Target Start/End: Original strand, 9291550 - 9291621
Alignment:
Q  348 acatatacataaacaaaggtaacgactccagagtaattagagaatcctcatcctatgataagaattcaattt 419  Q
    |||||||||||||||||||||  |||| || |||||||||||||||||  |||||| |||||||||||||||    
T  9291550 acatatacataaacaaaggtagagacttcaaagtaattagagaatccttgtcctataataagaattcaattt 9291621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 129 - 191
Target Start/End: Original strand, 9291409 - 9291470
Alignment:
Q  129 gaatagtctcaacattcagaaataagcttgtcaaaataaattatttaggagtgaagatctcaa 191  Q
    |||||||||||||||||||||||||||| | |||||| ||||||||| |||||||||||||||    
T  9291409 gaatagtctcaacattcagaaataagctggacaaaat-aattatttatgagtgaagatctcaa 9291470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 346 - 423
Target Start/End: Original strand, 9364227 - 9364304
Alignment:
Q  346 atacatatacataaacaaaggtaacgactccagagtaattagagaatcctcatcctatgataagaattcaatttgacc 423  Q
    |||||||||||||||||||||||  |||| || |||||||||||| ||||  |||||| |||||||||| ||||||||    
T  9364227 atacatatacataaacaaaggtatagacttcaaagtaattagagactccttgtcctataataagaattccatttgacc 9364304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 131 - 191
Target Start/End: Complemental strand, 8574193 - 8574134
Alignment:
Q  131 atagtctcaacattcagaaataagcttgtcaaaataaattatttaggagtgaagatctcaa 191  Q
    |||||||||||||||| |||| ||||||||||||| ||||||| |||||||||||||||||    
T  8574193 atagtctcaacattcataaattagcttgtcaaaat-aattattcaggagtgaagatctcaa 8574134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 36 - 84
Target Start/End: Original strand, 10347050 - 10347098
Alignment:
Q  36 aaaaaaccatgtttttgaaaggaactatgtacaaatttggagtaatttc 84  Q
    ||||||||||||||||||||||||||||| | |||||||||||||||||    
T  10347050 aaaaaaccatgtttttgaaaggaactatgcataaatttggagtaatttc 10347098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 129 - 235
Target Start/End: Complemental strand, 9295401 - 9295294
Alignment:
Q  129 gaatagtctcaacattcagaaataagcttgt-caaaata--aattatttaggagtgaagatctcaaacaataaatgaaaaagaacaacgattcataccac 225  Q
    |||||||||||||||||||||| |||||||| |||||||  ||||| |||||||||||||||  ||||||| |||| |||  || | | ||||||||||     
T  9295401 gaatagtctcaacattcagaaagaagcttgtacaaaataataattaattaggagtgaagatcataaacaatgaatggaaa--aaaagcaattcataccaa 9295304  T
Q  226 aattctttct 235  Q
    ||||||||||    
T  9295303 aattctttct 9295294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 13 - 86
Target Start/End: Complemental strand, 8574324 - 8574251
Alignment:
Q  13 aatatcacaaaagaatgttcgataaaaaaccatgtttttgaaaggaactatgtacaaatttggagtaatttcat 86  Q
    ||||||||||||||||  | ||||||||||| || ||||||| ||||||||| | |||||| ||||||||||||    
T  8574324 aatatcacaaaagaatagttgataaaaaaccgtgcttttgaatggaactatgcataaatttagagtaatttcat 8574251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 130 - 167
Target Start/End: Original strand, 10340887 - 10340924
Alignment:
Q  130 aatagtctcaacattcagaaataagcttgtcaaaataa 167  Q
    ||||||||||||||||||||||||||||||||||||||    
T  10340887 aatagtctcaacattcagaaataagcttgtcaaaataa 10340924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 37 - 86
Target Start/End: Original strand, 10371176 - 10371225
Alignment:
Q  37 aaaaaccatgtttttgaaaggaactatgtacaaatttggagtaatttcat 86  Q
    |||||||||| ||||||||||||||||| | |||||||||||||||||||    
T  10371176 aaaaaccatgcttttgaaaggaactatgcataaatttggagtaatttcat 10371225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 582 - 634
Target Start/End: Complemental strand, 7116018 - 7115966
Alignment:
Q  582 cttgcttgtacgattctgcttcttcctacgattatcaacaggtaaggaaggtg 634  Q
    |||||||||| |||||| ||||||||||| |||||||||||| ||||||||||    
T  7116018 cttgcttgtatgattctccttcttcctacaattatcaacagggaaggaaggtg 7115966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 86
Target Start/End: Complemental strand, 9062037 - 9061965
Alignment:
Q  14 atatcacaaaagaatgttcgataaaaaaccatgtttttgaaaggaactatgtacaaatttggagtaatttcat 86  Q
    |||||||||||||||  | |||||||| ||||| ||||||| | ||||||| | |||||||||||||||||||    
T  9062037 atatcacaaaagaatagttgataaaaacccatgcttttgaatgaaactatgcataaatttggagtaatttcat 9061965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 582 - 634
Target Start/End: Original strand, 9328392 - 9328444
Alignment:
Q  582 cttgcttgtacgattctgcttcttcctacgattatcaacaggtaaggaaggtg 634  Q
    ||||||||||||||||| ||||||||||  |||||||||||| ||||||||||    
T  9328392 cttgcttgtacgattctccttcttcctagaattatcaacagggaaggaaggtg 9328444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 571 - 634
Target Start/End: Complemental strand, 8573886 - 8573823
Alignment:
Q  571 aagtaccttcccttgcttgtacgattctgcttcttcctacgattatcaacaggtaaggaaggtg 634  Q
    |||||||||| ||||||||||| ||||| || |||||||| |||||||||||| ||| ||||||    
T  8573886 aagtaccttctcttgcttgtacaattctcctccttcctacaattatcaacagggaagaaaggtg 8573823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 380 - 419
Target Start/End: Original strand, 10341043 - 10341082
Alignment:
Q  380 gtaattagagaatcctcatcctatgataagaattcaattt 419  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  10341043 gtaattagagaatccttatcctatgataagaattcaattt 10341082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 348 - 423
Target Start/End: Complemental strand, 8574048 - 8573971
Alignment:
Q  348 acatatacataaacaaaggtaacgactccagagtaattagagaatcctcatccta--tgataagaattcaatttgacc 423  Q
    |||||||||||||||||||||   ||| || |||||||||||||||||  |||||  ||||||||||| |||||||||    
T  8574048 acatatacataaacaaaggtataaacttcaaagtaattagagaatccttgtcctatgtgataagaatttaatttgacc 8573971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 129 - 206
Target Start/End: Complemental strand, 9284958 - 9284883
Alignment:
Q  129 gaatagtctcaacattcagaaataagcttgt-caaaataaattatttaggagtgaagatctcaaacaataaatgaaaaa 206  Q
    ||||||||||||||||||||||||||| ||| |||||| ||||| |||||||| ||||||  |||||||||||||||||    
T  9284958 gaatagtctcaacattcagaaataagcgtgtacaaaat-aatta-ttaggagt-aagatcataaacaataaatgaaaaa 9284883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 350 - 416
Target Start/End: Complemental strand, 12006609 - 12006543
Alignment:
Q  350 atatacataaacaaaggtaacgactccagagtaattagagaatcctcatcctatgataagaattcaa 416  Q
    |||||||||||||||||||  |||| || |||||||||||||||||  |||||  ||||||||||||    
T  12006609 atatacataaacaaaggtagagacttcaaagtaattagagaatccttgtcctaaaataagaattcaa 12006543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 548 - 634
Target Start/End: Original strand, 9291675 - 9291767
Alignment:
Q  548 caaaaactcagttaaacaataagaagtacc------ttcccttgcttgtacgattctgcttcttcctacgattatcaacaggtaaggaaggtg 634  Q
    ||||||||||| ||| ||||||||||||||      ||| |||| | ||| |||||| ||||||||||| |||||||||||| ||||||||||    
T  9291675 caaaaactcagataatcaataagaagtaccgtttctttctcttgttcgtatgattctccttcttcctacaattatcaacagggaaggaaggtg 9291767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 86
Target Start/End: Original strand, 10351480 - 10351552
Alignment:
Q  13 aatatcacaaaagaatgttcgataaaaaaccatgtttttgaaaggaactatgtacaaatttggagtaatttcat 86  Q
    ||||||||||||||||  | |||||||| | ||| ||||||||||||||||| | |||||||||||| ||||||    
T  10351480 aatatcacaaaagaatagttgataaaaatc-atgcttttgaaaggaactatgcataaatttggagtactttcat 10351552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 582 - 634
Target Start/End: Original strand, 9315812 - 9315864
Alignment:
Q  582 cttgcttgtacgattctgcttcttcctacgattatcaacaggtaaggaaggtg 634  Q
    |||||||||| |||||| ||||||||||| || ||||||||| ||||||||||    
T  9315812 cttgcttgtatgattctccttcttcctacaataatcaacagggaaggaaggtg 9315864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 129 - 209
Target Start/End: Original strand, 9319012 - 9319091
Alignment:
Q  129 gaatagtctcaacattcagaaataagcttgtcaaaataaattatttaggagtgaagatctcaaacaataaatgaaaaagaa 209  Q
    |||||||| ||||||| ||||||||| | || |||| |||| |||||| |||||| |||||||||||| ||| ||||||||    
T  9319012 gaatagtcccaacatttagaaataagttggtaaaaa-aaataatttagaagtgaaaatctcaaacaatgaataaaaaagaa 9319091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 582 - 634
Target Start/End: Original strand, 9320775 - 9320827
Alignment:
Q  582 cttgcttgtacgattctgcttcttcctacgattatcaacaggtaaggaaggtg 634  Q
    ||||||||||||||||| ||||||| ||  |||||||||||| ||||||||||    
T  9320775 cttgcttgtacgattctccttcttcttagaattatcaacagggaaggaaggtg 9320827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 574 - 634
Target Start/End: Original strand, 10341134 - 10341194
Alignment:
Q  574 taccttcccttgcttgtacgattctgcttcttcctacgattatcaacaggtaaggaaggtg 634  Q
    ||||||| |||||||| | |||||| ||||||||||||||| |||||||| ||| ||||||    
T  10341134 taccttctcttgcttgaaggattctccttcttcctacgattgtcaacagggaagaaaggtg 10341194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 348 - 423
Target Start/End: Original strand, 9320583 - 9320658
Alignment:
Q  348 acatatacataaacaaaggtaacgactccagagtaattagagaatcctcatcctatgataagaattcaatttgacc 423  Q
    |||||||| ||||||||||||  |||| || ||||||||||| |||||  ||| || |||| ||||||||||||||    
T  9320583 acatatacgtaaacaaaggtagagacttcaaagtaattagagtatccttgtccgataataaaaattcaatttgacc 9320658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 171 - 288
Target Start/End: Original strand, 9272144 - 9272264
Alignment:
Q  171 atttaggagtgaagatctcaaacaataaatgaaaaagaaca---acgattcataccacaattctttctataagcagcaaattctttaactagtcacaagg 267  Q
    |||||||||| ||||||||||||||||||| ||||| || |   || |||||| ||| |||||||||| ||||||     ||   || ||||||||||||    
T  9272144 atttaggagtaaagatctcaaacaataaataaaaaataaaaaatacaattcatgccaaaattctttctttaagcaaatctttagctagctagtcacaagg 9272243  T
Q  268 tcaactctaaaactaacacaa 288  Q
    |||||||| |||||| |||||    
T  9272244 tcaactcttaaactagcacaa 9272264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #42
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 582 - 632
Target Start/End: Complemental strand, 12006467 - 12006417
Alignment:
Q  582 cttgcttgtacgattctgcttcttcctacgattatcaacaggtaaggaagg 632  Q
    ||||||||||||||||| ||||||| ||| ||| |||||||| ||||||||    
T  12006467 cttgcttgtacgattctccttcttcgtacaattctcaacagggaaggaagg 12006417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #43
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 565 - 631
Target Start/End: Complemental strand, 9065977 - 9065914
Alignment:
Q  565 aataagaagtaccttcccttgcttgtacgattctgcttcttcctacgattatcaacaggtaaggaag 631  Q
    |||||||||||||||| |||| |||| |||||   || |||||||| |||||||||||| |||||||    
T  9065977 aataagaagtaccttctcttggttgttcgatt---ctccttcctacaattatcaacagggaaggaag 9065914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #44
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 582 - 634
Target Start/End: Original strand, 9274293 - 9274345
Alignment:
Q  582 cttgcttgtacgattctgcttcttcctacgattatcaacaggtaaggaaggtg 634  Q
    |||||||||| |||||| ||||||||||  |||||||||||| ||||| ||||    
T  9274293 cttgcttgtatgattctccttcttcctagaattatcaacagggaaggagggtg 9274345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #45
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 13 - 81
Target Start/End: Original strand, 9291284 - 9291352
Alignment:
Q  13 aatatcacaaaagaatgttcgataaaaaaccatgtttttgaaaggaactatgtacaaatttggagtaat 81  Q
    |||||| |||||||||  | |||||||||||||| ||||||| | ||||||| | ||||||| ||||||    
T  9291284 aatatcgcaaaagaatagttgataaaaaaccatgcttttgaatgtaactatgcataaatttgaagtaat 9291352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #46
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 379 - 423
Target Start/End: Original strand, 9315662 - 9315706
Alignment:
Q  379 agtaattagagaatcctcatcctatgataagaattcaatttgacc 423  Q
    ||||||||| |||||||  |||||| |||||||||||||||||||    
T  9315662 agtaattagggaatccttgtcctataataagaattcaatttgacc 9315706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 77; Significance: 2e-35; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 140 - 423
Target Start/End: Original strand, 37461880 - 37462157
Alignment:
Q  140 acattcagaaataagcttgtcaaaataaattatttaggagtgaagatctcaaacaataaatgaaaaagaacaacgattcataccacaattctttctataa 239  Q
    ||||||||||||||||| ||||| |||| || ||||||||||||||||||||||||| ||||||||| |||| | |||||  ||| |||||||| | | |    
T  37461880 acattcagaaataagctggtcaagataattt-tttaggagtgaagatctcaaacaatgaatgaaaaa-aacagcaattcaagccaaaattctttttttta 37461977  T
Q  240 gcagcaaattctttaactagtcacaaggtcaactctaaaactaacacaaagcatacattgtggtc-nnnnnnngtttctttggaaatc-agcgtagacac 337  Q
      ||| ||||||||| |||||||||||||||| ||| ||||||||||| || || |||||| |||         ||||||| |||||| ||| || ||||    
T  37461978 --agcgaattctttagctagtcacaaggtcaattcttaaactaacacatagaattcattgttgtcaattttttatttcttttgaaatctagcatacacac 37462075  T
Q  338 attgtcaaatacatatacataaacaaaggtaacgactccagagtaattagagaatcctcatcctatgataagaattcaatttgacc 423  Q
    ||||||    |||||||||||||||||||||  |||| || |||||||||||||||||  |||||| | |||||||||||||||||    
T  37462076 attgtc----acatatacataaacaaaggtagagacttcaaagtaattagagaatccttgtcctataacaagaattcaatttgacc 37462157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 1e-27; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 496 - 579
Target Start/End: Original strand, 26574590 - 26574672
Alignment:
Q  496 atagagtttaaggtcaaaggtccattgaactgatataacttatacgcaacaacaaaaactcagttaaacaataagaagtacctt 579  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||    
T  26574590 atagagtttaatgtcaaaggtccattgaactgatataacttatacacaacaacaaaaactcagttaaac-ataaggagtacctt 26574672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 349 - 423
Target Start/End: Original strand, 26574509 - 26574583
Alignment:
Q  349 catatacataaacaaaggtaacgactccagagtaattagagaatcctcatcctatgataagaattcaatttgacc 423  Q
    ||||||||||||||| ||||| |||  || ||||||||||||||||| |||||||||||||||||||||||||||    
T  26574509 catatacataaacaacggtaaagacgtcaaagtaattagagaatccttatcctatgataagaattcaatttgacc 26574583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 101 - 167
Target Start/End: Original strand, 26574394 - 26574461
Alignment:
Q  101 atacacagatatcaaaccactgcagg-tagaatagtctcaacattcagaaataagcttgtcaaaataa 167  Q
    |||||||||||||||||||| ||||| | ||||||||||||||||||||||||||| |||||||||||    
T  26574394 atacacagatatcaaaccacggcagggtggaatagtctcaacattcagaaataagcatgtcaaaataa 26574461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667 (Bit Score: 56; Significance: 7e-23; HSPs: 2)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 129 - 232
Target Start/End: Original strand, 2008 - 2109
Alignment:
Q  129 gaatagtctcaacattcagaaataagcttgtcaaaataaattatttaggagtgaagatctcaaacaataaatgaaaaagaacaacgattcataccacaat 228  Q
    |||||||||||||||||||||||||||| |||||||| |||||||||||||| || |||||||||||| ||||||||| || | | |||||||||| |||    
T  2008 gaatagtctcaacattcagaaataagctggtcaaaat-aattatttaggagtcaaaatctcaaacaatgaatgaaaaa-aaaagcaattcataccaaaat 2105  T
Q  229 tctt 232  Q
    ||||    
T  2106 tctt 2109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 348 - 421
Target Start/End: Original strand, 4057 - 4130
Alignment:
Q  348 acatatacataaacaaaggtaacgactccagagtaattagagaatcctcatcctatgataagaattcaatttga 421  Q
    |||||||||||||||||||||  || | || |||||||| ||||||||  |||||| |||||||||||||||||    
T  4057 acatatacataaacaaaggtagagaattcaaagtaattatagaatccttttcctataataagaattcaatttga 4130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 7e-17; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 334 - 423
Target Start/End: Original strand, 29422911 - 29423000
Alignment:
Q  334 acacattgtcaaatacatatacataaacaaaggtaacgactccagagtaattagagaatcctcatcctatgataagaattcaatttgacc 423  Q
    ||||| |||||||||||||||||||||||||||||  |||| || | ||||||||||||| |  || ||| |||||||||||||||||||    
T  29422911 acacaatgtcaaatacatatacataaacaaaggtagagacttcaaaataattagagaatcattgtcatataataagaattcaatttgacc 29423000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 340 - 415
Target Start/End: Complemental strand, 29443849 - 29443774
Alignment:
Q  340 tgtcaaatacatatacataaacaaaggtaacgactccagagtaattagagaatcctcatcctatgataagaattca 415  Q
    ||||||||||| |||||||||||||||||  |||| || | |||||||||||||||  ||||||||||||||||||    
T  29443849 tgtcaaatacacatacataaacaaaggtagagacttcaaaataattagagaatccttgtcctatgataagaattca 29443774  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 334 - 419
Target Start/End: Complemental strand, 29453829 - 29453744
Alignment:
Q  334 acacattgtcaaatacatatacataaacaaaggtaacgactccagagtaattagagaatcctcatcctatgataagaattcaattt 419  Q
    ||||||||||  ||| ||||||||||||  |||||  |||| || |||||||||||||||||  | |||| |||||||||||||||    
T  29453829 acacattgtcggatagatatacataaacttaggtagagacttcaaagtaattagagaatccttgttctataataagaattcaattt 29453744  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 334 - 365
Target Start/End: Complemental strand, 29468309 - 29468278
Alignment:
Q  334 acacattgtcaaatacatatacataaacaaag 365  Q
    ||||||||||||||||||||||||||||||||    
T  29468309 acacattgtcaaatacatatacataaacaaag 29468278  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 549 - 603
Target Start/End: Complemental strand, 29443688 - 29443634
Alignment:
Q  549 aaaaactcagttaaacaataagaagtaccttcccttgcttgtacgattctgcttc 603  Q
    |||||||||| ||| ||||||||||||||||| |||||||||  |||||| ||||    
T  29443688 aaaaactcaggtaatcaataagaagtaccttctcttgcttgtttgattctccttc 29443634  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 549 - 598
Target Start/End: Complemental strand, 29468147 - 29468098
Alignment:
Q  549 aaaaactcagttaaacaataagaagtaccttcccttgcttgtacgattct 598  Q
    ||||||||||  || ||||||||||||||||| ||||||||| |||||||    
T  29468147 aaaaactcagacaatcaataagaagtaccttctcttgcttgtgcgattct 29468098  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 348 - 419
Target Start/End: Complemental strand, 41967252 - 41967181
Alignment:
Q  348 acatatacataaacaaaggtaacgactccagagtaattagagaatcctcatcctatgataagaattcaattt 419  Q
    |||| ||||||||||||||||| | || |  ||||||||||||||  | ||||||| |||||||||||||||    
T  41967252 acatgtacataaacaaaggtaaagccttcgaagtaattagagaatagttatcctataataagaattcaattt 41967181  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 36 - 86
Target Start/End: Complemental strand, 41968234 - 41968184
Alignment:
Q  36 aaaaaaccatgtttttgaaaggaactatgtacaaatttggagtaatttcat 86  Q
    ||||||||||| || |||||||||||||| | ||||| |||||||||||||    
T  41968234 aaaaaaccatgcttctgaaaggaactatgcataaattaggagtaatttcat 41968184  T

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