View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13381_low_5 (Length: 589)

Name: NF13381_low_5
Description: NF13381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13381_low_5
NF13381_low_5
[»] chr2 (5 HSPs)
chr2 (300-589)||(18891879-18892171)
chr2 (53-102)||(22191441-22191490)
chr2 (49-105)||(8033606-8033662)
chr2 (51-102)||(17658835-17658886)
chr2 (49-102)||(32503013-32503066)
[»] chr8 (1 HSPs)
chr8 (46-97)||(33229553-33229604)
[»] chr7 (7 HSPs)
chr7 (46-97)||(10525007-10525058)
chr7 (35-106)||(12427917-12427988)
chr7 (47-97)||(16810516-16810565)
chr7 (46-80)||(30935303-30935337)
chr7 (48-97)||(16830356-16830405)
chr7 (47-80)||(35660917-35660950)
chr7 (49-97)||(42709981-42710028)
[»] chr4 (7 HSPs)
chr4 (35-102)||(45921793-45921860)
chr4 (48-97)||(54090992-54091041)
chr4 (39-102)||(53924443-53924506)
chr4 (46-102)||(49448220-49448276)
chr4 (46-97)||(33614348-33614399)
chr4 (50-97)||(54458735-54458782)
chr4 (53-97)||(39051161-39051205)
[»] chr6 (10 HSPs)
chr6 (35-97)||(3889986-3890048)
chr6 (53-98)||(21394326-21394371)
chr6 (35-95)||(23765865-23765925)
chr6 (46-96)||(15965674-15965724)
chr6 (47-102)||(20832544-20832599)
chr6 (46-101)||(24794097-24794152)
chr6 (48-97)||(19121918-19121967)
chr6 (50-102)||(3960780-3960832)
chr6 (49-97)||(8592210-8592258)
chr6 (49-97)||(21394424-21394472)
[»] chr3 (8 HSPs)
chr3 (33-97)||(20124074-20124138)
chr3 (35-97)||(29504853-29504915)
chr3 (49-97)||(47337272-47337320)
chr3 (46-97)||(40472894-40472945)
chr3 (43-80)||(44248339-44248376)
chr3 (53-97)||(1163449-1163493)
chr3 (47-95)||(28860556-28860604)
chr3 (46-98)||(38181445-38181497)
[»] chr1 (7 HSPs)
chr1 (54-102)||(10595430-10595478)
chr1 (46-97)||(6219689-6219740)
chr1 (49-97)||(40649841-40649889)
chr1 (35-102)||(7790339-7790406)
chr1 (35-82)||(28504790-28504837)
chr1 (46-91)||(27562760-27562805)
chr1 (46-98)||(30570167-30570219)
[»] chr5 (5 HSPs)
chr5 (46-102)||(11275717-11275773)
chr5 (46-97)||(4902280-4902331)
chr5 (49-98)||(12640180-12640228)
chr5 (49-101)||(9900296-9900348)
chr5 (37-97)||(33391447-33391507)
[»] scaffold0252 (1 HSPs)
scaffold0252 (46-102)||(19817-19874)


Alignment Details
Target: chr2 (Bit Score: 267; Significance: 1e-149; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 300 - 589
Target Start/End: Complemental strand, 18892171 - 18891879
Alignment:
Q  300 attaccttataaacaatagcatttgaagtaaggaaaagacttctagaacgaatatcttttctaagtataaaccttctaactggtacataaagcaacatga 399  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  18892171 attaccttataaacaatagcatttgaagtaaggtaaagacttctagaacgaatatcttttctaagtataaaccttctaactggtacataaagcaacatta 18892072  T
Q  400 gtaacccaattccccaagctaatatcaataacagtgagtaaagtatccattgtactgtttggtacttaatgaaattcttctccatttcttgaaaagatgc 499  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18892071 gtaacccaattccccaagctaatatcaataacagtgagtaaagtatccattgtactgtttggtacttaatgaaattcttctccatttcttgaaaagatgc 18891972  T
Q  500 tgcatataacactt---cttcgtttccctcattttcttccaataaattcttctctaaggtatctatttccactacttcatccattgttgtttt 589  Q
    ||||||||||||||   |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18891971 tgcatataacacttcttcttcgtttccttcattttcttccaataaattcttctctaaggtatctatttccactacttcatccattgttgtttt 18891879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 53 - 102
Target Start/End: Complemental strand, 22191490 - 22191441
Alignment:
Q  53 tttttgtcacatgacgagggacctaattaagaaacttttgacaaaaacaa 102  Q
    |||||||||||||||||||||| ||||  |||||||||||||||| ||||    
T  22191490 tttttgtcacatgacgagggacttaatagagaaacttttgacaaagacaa 22191441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 49 - 105
Target Start/End: Complemental strand, 8033662 - 8033606
Alignment:
Q  49 tatgtttttgtcacatgacgagggacctaattaagaaacttttgacaaaaacaagga 105  Q
    ||||||||||||| |||||||| ||| ||||| |||||||||| ||||| |||||||    
T  8033662 tatgtttttgtcatatgacgagagacttaattgagaaacttttaacaaagacaagga 8033606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 51 - 102
Target Start/End: Complemental strand, 17658886 - 17658835
Alignment:
Q  51 tgtttttgtcacatgacgagggacctaattaagaaacttttgacaaaaacaa 102  Q
    |||||||||||||||||||| ||| ||||| ||||| |||||||||| ||||    
T  17658886 tgtttttgtcacatgacgagagacttaattgagaaatttttgacaaagacaa 17658835  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 49 - 102
Target Start/End: Original strand, 32503013 - 32503066
Alignment:
Q  49 tatgtttttgtcacatgacgagggacctaattaagaaacttttgacaaaaacaa 102  Q
    ||||||||| ||| |||||||||||| ||||| |||| ||||||||||| ||||    
T  32503013 tatgtttttatcatatgacgagggacttaattgagaatcttttgacaaagacaa 32503066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 46 - 97
Target Start/End: Complemental strand, 33229604 - 33229553
Alignment:
Q  46 ctttatgtttttgtcacatgacgagggacctaattaagaaacttttgacaaa 97  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  33229604 ctttatgtttttgtcacatgacgagggacctaattgagaaacttttgacaaa 33229553  T

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Target: chr7 (Bit Score: 48; Significance: 4e-18; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 46 - 97
Target Start/End: Original strand, 10525007 - 10525058
Alignment:
Q  46 ctttatgtttttgtcacatgacgagggacctaattaagaaacttttgacaaa 97  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  10525007 ctttatgtttttgtcacatgacgagggacctaattgagaaacttttgacaaa 10525058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 35 - 106
Target Start/End: Original strand, 12427917 - 12427988
Alignment:
Q  35 taggtcattgcctttatgtttttgtcacatgacgagggacctaattaagaaacttttgacaaaaacaaggac 106  Q
    |||||||||| ||||||||||||||||||||||||| |||| |||| | |||||||||||||| ||| ||||    
T  12427917 taggtcattgtctttatgtttttgtcacatgacgagagaccaaattgaaaaacttttgacaaagacatggac 12427988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 47 - 97
Target Start/End: Complemental strand, 16810565 - 16810516
Alignment:
Q  47 tttatgtttttgtcacatgacgagggacctaattaagaaacttttgacaaa 97  Q
    |||||||||||||||||||||||  ||||||||| ||||||||||||||||    
T  16810565 tttatgtttttgtcacatgacga-tgacctaattgagaaacttttgacaaa 16810516  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 46 - 80
Target Start/End: Original strand, 30935303 - 30935337
Alignment:
Q  46 ctttatgtttttgtcacatgacgagggacctaatt 80  Q
    |||||||||||||||||||||||||||||||||||    
T  30935303 ctttatgtttttgtcacatgacgagggacctaatt 30935337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 48 - 97
Target Start/End: Complemental strand, 16830405 - 16830356
Alignment:
Q  48 ttatgtttttgtcacatgacgagggacctaattaagaaacttttgacaaa 97  Q
    |||||||||||| ||||||||| |||||||||| |||||||| |||||||    
T  16830405 ttatgtttttgttacatgacgatggacctaattgagaaacttatgacaaa 16830356  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 80
Target Start/End: Complemental strand, 35660950 - 35660917
Alignment:
Q  47 tttatgtttttgtcacatgacgagggacctaatt 80  Q
    |||||||||||||||||||||||| |||||||||    
T  35660950 tttatgtttttgtcacatgacgagagacctaatt 35660917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 42710028 - 42709981
Alignment:
Q  49 tatgtttttgtcacatgacgagggacctaattaagaaacttttgacaaa 97  Q
    ||||||||| ||| |||||||||||| ||||| ||||||||||||||||    
T  42710028 tatgttttt-tcatatgacgagggacttaattgagaaacttttgacaaa 42709981  T

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Target: chr4 (Bit Score: 44; Significance: 9e-16; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 35 - 102
Target Start/End: Complemental strand, 45921860 - 45921793
Alignment:
Q  35 taggtcattgcctttatgtttttgtcacatgacgagggacctaattaagaaacttttgacaaaaacaa 102  Q
    |||||||||| |||||||||||||||||||||||| |||||||||| | ||| |||||||||| ||||    
T  45921860 taggtcattgtctttatgtttttgtcacatgacgatggacctaattgaaaaaattttgacaaatacaa 45921793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 48 - 97
Target Start/End: Original strand, 54090992 - 54091041
Alignment:
Q  48 ttatgtttttgtcacatgacgagggacctaattaagaaacttttgacaaa 97  Q
    ||||||||||||||||||||||||||||||||| ||||||||| ||||||    
T  54090992 ttatgtttttgtcacatgacgagggacctaattgagaaactttggacaaa 54091041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 39 - 102
Target Start/End: Complemental strand, 53924506 - 53924443
Alignment:
Q  39 tcattgcctttatgtttttgtcacatgacgagggacctaattaagaaacttttgacaaaaacaa 102  Q
    |||||| ||||||||||||||||||||  |||| || ||||| |||||||||||||||| ||||    
T  53924506 tcattgtctttatgtttttgtcacatggtgaggaacgtaattgagaaacttttgacaaagacaa 53924443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 46 - 102
Target Start/End: Original strand, 49448220 - 49448276
Alignment:
Q  46 ctttatgtttttgtcacatgacgagggacctaattaagaaacttttgacaaaaacaa 102  Q
    |||||||||||||||| |||||||| || |||||| | |||||||||||||| ||||    
T  49448220 ctttatgtttttgtcatatgacgagcgatctaattgataaacttttgacaaagacaa 49448276  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 46 - 97
Target Start/End: Original strand, 33614348 - 33614399
Alignment:
Q  46 ctttatgtttttgtcacatgacgagggacctaattaagaaacttttgacaaa 97  Q
    |||||||||||| |||||||| |||||||| |||| ||||||||||| ||||    
T  33614348 ctttatgtttttatcacatgatgagggaccaaattgagaaacttttgtcaaa 33614399  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 50 - 97
Target Start/End: Original strand, 54458735 - 54458782
Alignment:
Q  50 atgtttttgtcacatgacgagggacctaattaagaaacttttgacaaa 97  Q
    ||||||||||||||| ||||||||||||||  ||| ||||||||||||    
T  54458735 atgtttttgtcacataacgagggacctaatcgagacacttttgacaaa 54458782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 53 - 97
Target Start/End: Complemental strand, 39051205 - 39051161
Alignment:
Q  53 tttttgtcacatgacgagggacctaattaagaaacttttgacaaa 97  Q
    |||||||||||||||||| ||| ||||| |||||||||| |||||    
T  39051205 tttttgtcacatgacgagtgacttaattgagaaacttttaacaaa 39051161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 35 - 97
Target Start/End: Original strand, 3889986 - 3890048
Alignment:
Q  35 taggtcattgcctttatgtttttgtcacatgacgagggacctaattaagaaacttttgacaaa 97  Q
    |||||| ||| ||| ||||||||||||||  ||||||||||||||| ||||||||||||||||    
T  3889986 taggtccttgtcttcatgtttttgtcacacaacgagggacctaattgagaaacttttgacaaa 3890048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 53 - 98
Target Start/End: Complemental strand, 21394371 - 21394326
Alignment:
Q  53 tttttgtcacatgacgagggacctaattaagaaacttttgacaaaa 98  Q
    |||||||||||||||||||||| ||||| |||||||||||||||||    
T  21394371 tttttgtcacatgacgagggacataattgagaaacttttgacaaaa 21394326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 35 - 95
Target Start/End: Original strand, 23765865 - 23765925
Alignment:
Q  35 taggtcattgcctttatgtttttgtcacatgacgagggacctaattaagaaacttttgaca 95  Q
    |||||||||| |||||||||||||||||||||  |||||| ||||| ||||| ||||||||    
T  23765865 taggtcattgtctttatgtttttgtcacatgataagggacttaattgagaaatttttgaca 23765925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 46 - 96
Target Start/End: Complemental strand, 15965724 - 15965674
Alignment:
Q  46 ctttatgtttttgtcacatgacgagggacctaattaagaaacttttgacaa 96  Q
    |||||||||||||||||||||||| |||| ||||| | |||||||||||||    
T  15965724 ctttatgtttttgtcacatgacgaaggacgtaattgaaaaacttttgacaa 15965674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 47 - 102
Target Start/End: Original strand, 20832544 - 20832599
Alignment:
Q  47 tttatgtttttgtcacatgacgagggacctaattaagaaacttttgacaaaaacaa 102  Q
    |||||||||| |||| |||||||| ||||||||| | ||||| |||||||||||||    
T  20832544 tttatgttttggtcatatgacgagtgacctaattgataaactattgacaaaaacaa 20832599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 46 - 101
Target Start/End: Complemental strand, 24794152 - 24794097
Alignment:
Q  46 ctttatgtttttgtcacatgacgagggacctaattaagaaacttttgacaaaaaca 101  Q
    |||||||||||||||||||   |||||||| |||||| |||||||| |||||||||    
T  24794152 ctttatgtttttgtcacatattgagggaccaaattaaaaaacttttaacaaaaaca 24794097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 48 - 97
Target Start/End: Complemental strand, 19121967 - 19121918
Alignment:
Q  48 ttatgtttttgtcacatgacgagggacctaattaagaaacttttgacaaa 97  Q
    |||||||||||||  |||| ||||||||||||| |||| |||||||||||    
T  19121967 ttatgtttttgtccgatgatgagggacctaatttagaagcttttgacaaa 19121918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 50 - 102
Target Start/End: Complemental strand, 3960832 - 3960780
Alignment:
Q  50 atgtttttgtcacatgacgagggacctaattaagaaacttttgacaaaaacaa 102  Q
    ||||||||||||||||| |||||| |||||  ||||| |||||||||| ||||    
T  3960832 atgtttttgtcacatgatgagggatctaatggagaaagttttgacaaagacaa 3960780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 49 - 97
Target Start/End: Original strand, 8592210 - 8592258
Alignment:
Q  49 tatgtttttgtcacatgacgagggacctaattaagaaacttttgacaaa 97  Q
    ||||||||||||| ||||||| |||| ||||| | ||||||||||||||    
T  8592210 tatgtttttgtcatatgacgatggacttaattgaaaaacttttgacaaa 8592258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 21394472 - 21394424
Alignment:
Q  49 tatgtttttgtcacatgacgagggacctaattaagaaacttttgacaaa 97  Q
    ||||||||| ||||||||||||| || ||||| |||||||||| |||||    
T  21394472 tatgtttttatcacatgacgaggtacttaattgagaaacttttaacaaa 21394424  T

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Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 33 - 97
Target Start/End: Complemental strand, 20124138 - 20124074
Alignment:
Q  33 actaggtcattgcctttatgtttttgtcacatgacgagggacctaattaagaaacttttgacaaa 97  Q
    ||||| |||||| ||| |||||||||| |||||||||| ||| ||||| ||||||||||||||||    
T  20124138 actagatcattgtcttgatgtttttgttacatgacgagagacttaattgagaaacttttgacaaa 20124074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 35 - 97
Target Start/End: Original strand, 29504853 - 29504915
Alignment:
Q  35 taggtcattgcctttatgtttttgtcacatgacgagggacctaattaagaaacttttgacaaa 97  Q
    ||||||| || ||||||| |||||||||||||||||||||| |||  |||||||||| |||||    
T  29504853 taggtcaatgtctttatgcttttgtcacatgacgagggaccaaatcgagaaacttttaacaaa 29504915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 49 - 97
Target Start/End: Original strand, 47337272 - 47337320
Alignment:
Q  49 tatgtttttgtcacatgacgagggacctaattaagaaacttttgacaaa 97  Q
    ||||||||||||| || ||||||||| ||||| ||||||||||||||||    
T  47337272 tatgtttttgtcatataacgagggacttaattgagaaacttttgacaaa 47337320  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 46 - 97
Target Start/End: Complemental strand, 40472945 - 40472894
Alignment:
Q  46 ctttatgtttttgtcacatgacgagggacctaattaagaaacttttgacaaa 97  Q
    ||||||||||||||||||  | ||||||||||||  ||||||||||||||||    
T  40472945 ctttatgtttttgtcacacaatgagggacctaatcgagaaacttttgacaaa 40472894  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 80
Target Start/End: Complemental strand, 44248376 - 44248339
Alignment:
Q  43 tgcctttatgtttttgtcacatgacgagggacctaatt 80  Q
    ||||||||||||||||||||||||||| ||| ||||||    
T  44248376 tgcctttatgtttttgtcacatgacgaaggatctaatt 44248339  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 53 - 97
Target Start/End: Complemental strand, 1163493 - 1163449
Alignment:
Q  53 tttttgtcacatgacgagggacctaattaagaaacttttgacaaa 97  Q
    ||||| |||||||||||| ||| ||||| ||||||||||||||||    
T  1163493 tttttttcacatgacgagagacttaattgagaaacttttgacaaa 1163449  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 47 - 95
Target Start/End: Complemental strand, 28860604 - 28860556
Alignment:
Q  47 tttatgtttttgtcacatgacgagggacctaattaagaaacttttgaca 95  Q
    |||||||||||||| ||||||||  ||||||||| ||||| ||||||||    
T  28860604 tttatgtttttgtcccatgacgaatgacctaattgagaaatttttgaca 28860556  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 46 - 98
Target Start/End: Original strand, 38181445 - 38181497
Alignment:
Q  46 ctttatgtttttgtcacatgacgagggacctaattaagaaacttttgacaaaa 98  Q
    ||||||||||||||||||| |||||| | |||||||| ||  |||||||||||    
T  38181445 ctttatgtttttgtcacatcacgaggaatctaattaaaaagtttttgacaaaa 38181497  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 54 - 102
Target Start/End: Complemental strand, 10595478 - 10595430
Alignment:
Q  54 ttttgtcacatgacgagggacctaattaagaaacttttgacaaaaacaa 102  Q
    |||||||||||||||| |||||||||| ||||||||||||||| |||||    
T  10595478 ttttgtcacatgacgaaggacctaattgagaaacttttgacaataacaa 10595430  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 46 - 97
Target Start/End: Complemental strand, 6219740 - 6219689
Alignment:
Q  46 ctttatgtttttgtcacatgacgagggacctaattaagaaacttttgacaaa 97  Q
    ||||||||||||||||||| | ||||||||||||| ||||| ||||||||||    
T  6219740 ctttatgtttttgtcacataatgagggacctaattgagaaatttttgacaaa 6219689  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 40649889 - 40649841
Alignment:
Q  49 tatgtttttgtcacatgacgagggacctaattaagaaacttttgacaaa 97  Q
    ||||||||| |||||||||||||||| ||||| |||||||||| |||||    
T  40649889 tatgtttttttcacatgacgagggacttaattgagaaacttttaacaaa 40649841  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 35 - 102
Target Start/End: Complemental strand, 7790406 - 7790339
Alignment:
Q  35 taggtcattgcctttatgtttttgtcacatgacgagggacctaattaagaaacttttgacaaaaacaa 102  Q
    |||||| ||| | |||| |||||||||||||| |||||||  |||||| |||||||||||||| ||||    
T  7790406 taggtctttgtcattatatttttgtcacatgatgagggactaaattaaaaaacttttgacaaagacaa 7790339  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 35 - 82
Target Start/End: Complemental strand, 28504837 - 28504790
Alignment:
Q  35 taggtcattgcctttatgtttttgtcacatgacgagggacctaattaa 82  Q
    |||||||||| |||||||||||| ||||||||| ||||| ||||||||    
T  28504837 taggtcattgtctttatgtttttatcacatgacaagggatctaattaa 28504790  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 46 - 91
Target Start/End: Original strand, 27562760 - 27562805
Alignment:
Q  46 ctttatgtttttgtcacatgacgagggacctaattaagaaactttt 91  Q
    ||||||||||| |||| |||||||||||||||||| | ||||||||    
T  27562760 ctttatgttttagtcatatgacgagggacctaattgaaaaactttt 27562805  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 46 - 98
Target Start/End: Complemental strand, 30570219 - 30570167
Alignment:
Q  46 ctttatgtttttgtcacatgacgagggacctaattaagaaacttttgacaaaa 98  Q
    |||||||||||||||| || ||||  ||| ||||| |||||||||||||||||    
T  30570219 ctttatgtttttgtcatataacgaatgacttaattgagaaacttttgacaaaa 30570167  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 46 - 102
Target Start/End: Complemental strand, 11275773 - 11275717
Alignment:
Q  46 ctttatgtttttgtcacatgacgagggacctaattaagaaacttttgacaaaaacaa 102  Q
    |||||||||||||||||| ||| ||||| | |||| |||||||||||||||| ||||    
T  11275773 ctttatgtttttgtcacacgactagggatcaaattgagaaacttttgacaaagacaa 11275717  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 46 - 97
Target Start/End: Original strand, 4902280 - 4902331
Alignment:
Q  46 ctttatgtttttgtcacatgacgagggacctaattaagaaacttttgacaaa 97  Q
    ||||||||||||||||||||| || ||||| | || ||||||||||||||||    
T  4902280 ctttatgtttttgtcacatgatgatggaccaatttgagaaacttttgacaaa 4902331  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 49 - 98
Target Start/End: Original strand, 12640180 - 12640228
Alignment:
Q  49 tatgtttttgtcacatgacgagggacctaattaagaaacttttgacaaaa 98  Q
    ||||||||| |||||||||||||||| ||||| | |||||||||||||||    
T  12640180 tatgttttt-tcacatgacgagggacttaattgaaaaacttttgacaaaa 12640228  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 49 - 101
Target Start/End: Original strand, 9900296 - 9900348
Alignment:
Q  49 tatgtttttgtcacatgacgagggacctaattaagaaacttttgacaaaaaca 101  Q
    ||||||||||||||||| | |||||  ||||| ||||| ||||||||||||||    
T  9900296 tatgtttttgtcacatgtcaagggatttaattgagaaatttttgacaaaaaca 9900348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 37 - 97
Target Start/End: Complemental strand, 33391507 - 33391447
Alignment:
Q  37 ggtcattgcctttatgtttttgtcacatgacgagggacctaattaagaaacttttgacaaa 97  Q
    ||||| || |||||||||||  ||||||||| |||||| ||||| |||||||||| |||||    
T  33391507 ggtcaatgtctttatgttttattcacatgacaagggacataattgagaaacttttaacaaa 33391447  T

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Target: scaffold0252 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0252
Description:

Target: scaffold0252; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 46 - 102
Target Start/End: Complemental strand, 19874 - 19817
Alignment:
Q  46 ctttatgt-ttttgtcacatgacgagggacctaattaagaaacttttgacaaaaacaa 102  Q
    |||||||| ||||||||||| | |||||||| |||| |||||||||||||||| ||||    
T  19874 ctttatgtgttttgtcacataatgagggaccaaattgagaaacttttgacaaacacaa 19817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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