View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13381_low_6 (Length: 584)
Name: NF13381_low_6
Description: NF13381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13381_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 142; Significance: 3e-74; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 388 - 564
Target Start/End: Original strand, 12381447 - 12381632
Alignment:
| Q |
388 |
atagaaaattaatgaaccaatcttattggtaatttgcaaattaataagattattgt---------gcatttttgaaggactacaaatatgctcttaatga |
478 |
Q |
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| T |
12381447 |
atagaaaattaatgaaccaatcttattggtaatttgcaaattaataagattattgtttgatatttgcatttttgaaggactacaaatatgctcttaatga |
12381546 |
T |
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| Q |
479 |
taaaggaatgccgaaaaatgctttcccgaaacattggaagggggatcgtggattgtattgtgcaggacttgcaaggagaggcttat |
564 |
Q |
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| T |
12381547 |
taaaggaatgcctaaaaatgctttcccaaaacattggaagggggatcgtggattgtattgtggaggacttgcaaggagaggcttat |
12381632 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 208 - 369
Target Start/End: Original strand, 12381295 - 12381453
Alignment:
| Q |
208 |
accaggttgttccttcaaatataaccagaatcgagaagaagaaaattgtctttgaaaacaatatagaaagagagtttgatgcaattgtttttgctaccgg |
307 |
Q |
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| T |
12381295 |
accaggttgttccttcaaatataaccagaattgagaagaagaaaattgtctttgaaaacaatgtagaaagagagtttgatgcaattgtttttgctaccgg |
12381394 |
T |
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| Q |
308 |
ctacaaaagcatagctaatggatggctcaaggtataaaagttcttcttattcttgatagaaa |
369 |
Q |
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| T |
12381395 |
ctataaaagtatagctaatggatggctcaaggtataaaag---ttcttattcttgatagaaa |
12381453 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 12381000 - 12381064
Alignment:
| Q |
1 |
aaagtcggccgttattgatgttggaaccattggaaagattaaggagggagctataaaggtaaatt |
65 |
Q |
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| T |
12381000 |
aaagtctgccgttattgatgttggaaccattggaaagattaaggagggtgctataaaggtaaatt |
12381064 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 166 - 207
Target Start/End: Original strand, 12381110 - 12381151
Alignment:
| Q |
166 |
ttttttaagtttattcaatatctaatgtatttggtctatata |
207 |
Q |
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| T |
12381110 |
ttttttaggttcattcaatatctaatgtatttggtctatata |
12381151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 70; Significance: 3e-31; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 453 - 562
Target Start/End: Original strand, 14354264 - 14354373
Alignment:
| Q |
453 |
aaggactacaaatatgctcttaatgataaaggaatgccgaaaaatgctttcccgaaacattggaagggggatcgtggattgtattgtgcaggacttgcaa |
552 |
Q |
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| T |
14354264 |
aaggattacaaatatgctcttaatgagaaagggatgccaaaaaatgcttacccgagtcattggaagggggatcatggattgtactgtgcaggactggcaa |
14354363 |
T |
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| Q |
553 |
ggagaggctt |
562 |
Q |
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| T |
14354364 |
ggagaggctt |
14354373 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 210 - 343
Target Start/End: Original strand, 14353959 - 14354092
Alignment:
| Q |
210 |
caggttgttccttcaaatataaccagaatcgagaagaagaaaattgtctttgaaaacaatatagaaagagagtttgatgcaattgtttttgctaccggct |
309 |
Q |
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| T |
14353959 |
caggttgtttcttcatatattacgagaattgagaaaaagaaagttgtatttgaaaacaacatggaaaaagagtttgatgcgatcgtttttgcaactggct |
14354058 |
T |
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| Q |
310 |
acaaaagcatagctaatggatggctcaaggtata |
343 |
Q |
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| T |
14354059 |
acaaaagcatagctaatgggtggcttaaggtata |
14354092 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 14353819 - 14353879
Alignment:
| Q |
1 |
aaagtcggccgttattgatgttggaaccattggaaagattaaggagggagctataaaggta |
61 |
Q |
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| T |
14353819 |
aaagtctgcagttattgatgttggaaccgttgaaaagattaaggaggggtctataaaggta |
14353879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 210 - 343
Target Start/End: Complemental strand, 43883628 - 43883491
Alignment:
| Q |
210 |
caggttgttccttcaaatata-accagaatcgagaagaagaaaattgtc---tttgaaaacaatatagaaagagagtttgatgcaattgtttttgctacc |
305 |
Q |
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| T |
43883628 |
caggttgttccttcagatatttacgagaattgagaaaaagaaagttgtactatttggaaacaacatggaaaaagagtttgatgtaatcgttttcgcgact |
43883529 |
T |
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| Q |
306 |
ggctacaaaagcatagctaatggatggctcaaggtata |
343 |
Q |
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| T |
43883528 |
ggctacaaaagcatagctaatgggtggcttaatgtata |
43883491 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 167 - 205
Target Start/End: Complemental strand, 32082198 - 32082160
Alignment:
| Q |
167 |
tttttaagtttattcaatatctaatgtatttggtctata |
205 |
Q |
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| T |
32082198 |
tttttaagtttattcaacatctaatatatttggtctata |
32082160 |
T |
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