View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13381_low_8 (Length: 567)
Name: NF13381_low_8
Description: NF13381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13381_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 20 - 467
Target Start/End: Original strand, 24363068 - 24363510
Alignment:
| Q |
20 |
tgaatattactagccataagctaaaatttgttataaaacttccaaacacataaggcttcagcttttgtatgctttctctatactgcatgttatcttgcca |
119 |
Q |
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| T |
24363068 |
tgaatattactagccataagctaaaatttgttataaaacttccaaacacataaggcttcagcttttctatgctttctctatactgcatgttatcttgcca |
24363167 |
T |
|
| Q |
120 |
aagtttagctctattcttattcaagttgattacctcataagtaagcaagcatgactttagttagataagaggggtcctaccaacaacaactttccaatac |
219 |
Q |
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| T |
24363168 |
aagtttagctctattcttattcaagttgattacctcataagtaagcaagcatgactttagttagataagaggggtcctaccaacaacaactttccaatac |
24363267 |
T |
|
| Q |
220 |
aaaactatcaataaattaagaaagtgcaaccaccaaagtaacgaactatctaaaggtagtggccctatgatacattaacnnnnnnnnnnnnaaatgagca |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
24363268 |
aaaactatcaataaattaagaaagtgcaaccaccaaagtaacgaactatctaaaggtagtggccctatgatacattaa-----ttttttttaaatgagca |
24363362 |
T |
|
| Q |
320 |
acaaaatcaacatggaaaaatgtgatagttagacaagtataattaatgaataagcaaattagtagtatgagtgttttacacttatttgaaatatatcaca |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| |
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| T |
24363363 |
acaaaatcaacatggaaaaatgtgatagttagacaagtataattaatgaataagcaaattagtactatgagtgttttacacttatttaaaatatatcaca |
24363462 |
T |
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| Q |
420 |
atgtaaatttgagggtcctggatcctctactgcagcactcacaatagg |
467 |
Q |
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| T |
24363463 |
atgtaaatttgagggtcctggatcctctactgcagcactcacaatagg |
24363510 |
T |
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