View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13382_high_12 (Length: 569)
Name: NF13382_high_12
Description: NF13382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13382_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 358; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 13 - 518
Target Start/End: Complemental strand, 53090555 - 53090045
Alignment:
| Q |
13 |
catcacatcactcaattttattagaatatcaaaatggttaattacttgaattatttaaatcaccaataaggaattcttggacattttaattgaaggtcca |
112 |
Q |
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| T |
53090555 |
catcacatcactcaattttattagaatatcaaaatggttaattacttgaattatttaaatcaccaataaggaattcttggacattttaattgaaggtcca |
53090456 |
T |
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| Q |
113 |
tccatcaataagattctcctatcctatgannnnnnnnngaaacagggtacaaactacaagtgcagattgtcatcaattttgcagagtgtgtcatgtgctt |
212 |
Q |
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| T |
53090455 |
tccatcaataagattctcctatcctatgttttttttttgaaacagggtacaaactacaagtgcagattgtcatcaa-tttgcagagtgtgtcatgtgctt |
53090357 |
T |
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| Q |
213 |
gcttgtatttgtgtcttttgctttcttcaccgtctaattgaataaaggaagtgaagggnnnnnnnnnnttctgcttttaatttttacttttgtctgtgca |
312 |
Q |
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| T |
53090356 |
gcttgtatttgtgtcttttgctttcttcaccgtctaattgaataaaggaagtgaag---aaaaaaaaattctgcttttaatttttacttttgtctgtgca |
53090260 |
T |
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| Q |
313 |
caatatataagtaaattcatttgtgttttcaatatagcgtgacaagagaaatgctagcaacacacattgttggaaaatgtatgttagaatgtgtgttgat |
412 |
Q |
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| T |
53090259 |
ctatatataagtaaattcatttgtgctttcaatatagtgtgacaagagaaatgctagcaacacacattattgaaaagtatatgttagaacgtgtgttgat |
53090160 |
T |
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| Q |
413 |
aa-------catttctcagtttgacaatatgatgcgacatgagtgatagatatactcaaatgggtgttgc--tatatctcccaataaaatatatagcgaa |
503 |
Q |
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| T |
53090159 |
aacatttctcatttctcagtttaacaatatgatgcgacatgagtgatagatatactcaaatgggtgttgctatatatctcccaataaaatatatagcgaa |
53090060 |
T |
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| Q |
504 |
tgattcatgaatgta |
518 |
Q |
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| T |
53090059 |
tgattcacgaatgta |
53090045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 523 - 552
Target Start/End: Complemental strand, 53089964 - 53089935
Alignment:
| Q |
523 |
cgtattgtgaaacttcgtgaacccacttct |
552 |
Q |
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| T |
53089964 |
cgtattgtgaaacttcgtgaacccacttct |
53089935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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