View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13382_high_13 (Length: 548)

Name: NF13382_high_13
Description: NF13382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13382_high_13
NF13382_high_13
[»] chr6 (10 HSPs)
chr6 (1-534)||(1459568-1460102)
chr6 (4-535)||(1470953-1471485)
chr6 (11-338)||(7564788-7565116)
chr6 (41-235)||(370853-371047)
chr6 (41-166)||(176198-176317)
chr6 (108-179)||(1442234-1442305)
chr6 (107-166)||(9819957-9820016)
chr6 (107-166)||(9825637-9825696)
chr6 (241-289)||(176039-176087)
chr6 (202-234)||(9825729-9825761)
[»] chr4 (1 HSPs)
chr4 (95-228)||(55419578-55419711)
[»] chr7 (1 HSPs)
chr7 (123-228)||(3926855-3926960)
[»] scaffold0200 (1 HSPs)
scaffold0200 (109-161)||(903-955)
[»] chr5 (1 HSPs)
chr5 (109-161)||(41973595-41973647)
[»] chr3 (1 HSPs)
chr3 (127-167)||(2631220-2631260)


Alignment Details
Target: chr6 (Bit Score: 499; Significance: 0; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 1 - 534
Target Start/End: Original strand, 1459568 - 1460102
Alignment:
Q  1 caaaatcttacataacccaaatatc-aaaaaagattttgcatgagcaaggacgcataagtaatccctataaacccccaagctaaagttatgcagaggttc 99  Q
    ||||||||| ||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1459568 caaaatctttcataacccaaatatccaaaaaagattttgtatgagcaaggacgcataagtaatccctataaacccccaagctaaagttatgcagaggttc 1459667  T
Q  100 atctaaaccataattaggctgcaaaatctcttgataagactcgtttcctaaatcaagagaaagaatgacccgtgaagagtcattctctcgatccagtatg 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1459668 atctaaaccataattaggctgcaaaatctcttgataagactcgtttcctaaatcaagagaaagaatgacccgtgaagagtcattctctcgatccagtatg 1459767  T
Q  200 acccaattaatggtgccacttacaaattttcctggatgtctttcgggttgacccatgagttgagaagggaagtctggaattgttctccaaaaatcgttac 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  1459768 acccaattaatggtgccacttacaaattttcctggatgtctttcgggttgacccatgatttgagaagggaagtctggaattgttctccaaaaatcgttac 1459867  T
Q  300 ctaaggtactaaccttaactagagttttgcaagatttattcaattggtagcaaaaaacaacaactaccctgtagctatttgtgaaatgatcatatccaaa 399  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  1459868 ctaaggtactaaccttaactagagttttgcaagatttattcaattggtagcaaaaaacaacaactaccctgtagctatttgtgaaatgatcatacccaaa 1459967  T
Q  400 actatatgaagttttactcgtaagagaaggagaattttcataaagtggcaataccttgaagttcctggtacaagggttccatattacaagtctaacatgc 499  Q
    |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  1459968 actatatgaagttttactcgtaagagaaggaggattttcataaagtgacaataccttgaagttcctagtacaagggttccatattacaagtctaacatgc 1460067  T
Q  500 ctgttataatagtcagtcgttttgaaacagatgat 534  Q
    |||||||||||||||||||||||||||||||||||    
T  1460068 ctgttataatagtcagtcgttttgaaacagatgat 1460102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 4 - 535
Target Start/End: Original strand, 1470953 - 1471485
Alignment:
Q  4 aatcttacataacccaaatatc-aaaaaagattttgcatgagcaaggacgcataagtaatccctataaacccccaagctaaagttatgcagaggttcatc 102  Q
    |||||| ||||||||||||||| ||||||||||| | ||||||||||| |||||||||||||||| |||||||||||||||||||| |||||||||||||    
T  1470953 aatctttcataacccaaatatccaaaaaagatttggtatgagcaaggatgcataagtaatccctagaaacccccaagctaaagttacgcagaggttcatc 1471052  T
Q  103 taaaccataattaggctgcaaaatctcttgataagactcgtttcctaaatcaagagaaagaatgacccgtgaagagtcattctctcgatccagtatgacc 202  Q
    |||| |||||| |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |||| ||||    
T  1471053 taaatcataatcaggctgtaaaatctcttgataagactcgtttcctaaattaagagaaagaatgacccgtgaagagtcattctcttgatctagtacgacc 1471152  T
Q  203 caattaatggtgccacttacaaattttcctggatgtctttcgggttgacccatgagttgagaagggaagtctggaattgttctccaaaaatcgttaccta 302  Q
    ||||||||||| |||| |||||||||  |   ||  | |||||||||||||||||| ||||||||||||||| |||| ||||||||||||| ||||||||    
T  1471153 caattaatggtaccacatacaaatttcgccatatacccttcgggttgacccatgagctgagaagggaagtcttgaatcgttctccaaaaattgttaccta 1471252  T
Q  303 aggtactaaccttaactagagttttgcaagatttattcaattggtagcaaaaaacaacaactaccctgtagctatttgtgaaatgatcatatccaaaact 402  Q
    | |||  |||||||||||||||||||||| || || ||  ||||||||||||||| ||||||||| |||| ||||| ||||| |||||||| ||||||||    
T  1471253 aagtatgaaccttaactagagttttgcaacatctagtctgttggtagcaaaaaacgacaactaccttgtaactattggtgaattgatcatacccaaaact 1471352  T
Q  403 atatgaagttttactcgtaagagaaggagaattttcataaagtggcaataccttgaagttcctggtacaagggttccatattacaagtctaacatgcctg 502  Q
    ||||||||||||| | ||||||||| | | ||||||  ||||||||||||||||||| ||||| |||||||||||||||||||||||  || |||| |||    
T  1471353 atatgaagttttagttgtaagagaaagtggattttccaaaagtggcaataccttgaatttcctcgtacaagggttccatattacaagattaccatgactg 1471452  T
Q  503 ttataatagtcagtcgttttgaaacagatgatg 535  Q
    |||||||| ||| ||||||||||||||||||||    
T  1471453 ttataatattcaatcgttttgaaacagatgatg 1471485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 11 - 338
Target Start/End: Original strand, 7564788 - 7565116
Alignment:
Q  11 cataacccaaatat-caaaaaagattttgcatgagcaaggacgcataagtaatccctataaacccccaagctaaagttatgcagaggttcatctaaacca 109  Q
    |||||||||||||| |||||||| | | |  ||||||||||| |||||| |||||||| ||||||| |||||||||| | ||||| |||  |  | ||||    
T  7564788 cataacccaaatattcaaaaaagttgtagtgtgagcaaggacccataagcaatccctacaaacccctaagctaaagtaacgcagacgttggtgaacacca 7564887  T
Q  110 taattaggctgcaaaatctcttgataagactcgtttcctaaatcaagagaaagaatgacccgtgaagagtcattctctcgatccagtatgacccaattaa 209  Q
    ||||  ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||| ||| ||||   ||||||||||| ||    
T  7564888 taatctggctgcaaaatctcttgataagactcgttacctaaatcaagggaaagaatgacccatgaagagtcattatcttgatcttttatgacccaatgaa 7564987  T
Q  210 tggtgccacttacaaattttcctggatgtctttcgggttgacccatgagttgagaagggaagtctggaattgttctccaaaaatcgttacctaaggtact 309  Q
    ||| ||||||||||||||| ||   | ||| ||| |||  |||| ||  || ||||||||||||||||||  ||||||||| || | ||||||| |||      
T  7564988 tggcgccacttacaaatttcccaacacgtccttcaggtacacccttgttttcagaagggaagtctggaatccttctccaaacattgctacctaaagtatg 7565087  T
Q  310 aaccttaactagagttttgcaagatttat 338  Q
    |||||||||| ||||||||||| ||||||    
T  7565088 aaccttaacttgagttttgcaaaatttat 7565116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 41 - 235
Target Start/End: Original strand, 370853 - 371047
Alignment:
Q  41 tgagcaaggacgcataagtaatccctataaacccccaagctaaagttatgcagaggttcatctaaaccataattaggctgcaaaatctcttgataagact 140  Q
    |||||||||| ||||||| |||||||| ||||| |||||   || | | ||||||||||||||| |||||||| ||||||| |||||||||||||| |||    
T  370853 tgagcaaggatgcataagcaatccctagaaacctccaagtggaattcaagcagaggttcatctagaccataatcaggctgcgaaatctcttgataatact 370952  T
Q  141 cgtttcctaaatcaagagaaagaatgacccgtgaagagtcattctctcgatccagtatgacccaattaatggtgccacttacaaattttcctgga 235  Q
    | ||| |||||||||||||||||||||||| ||||  ||  |||| |  ||| |||||||||||||||||||| |||||||||||||||||||||    
T  370953 ctttttctaaatcaagagaaagaatgacccatgaattgttgttctttttatctagtatgacccaattaatggttccacttacaaattttcctgga 371047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 41 - 166
Target Start/End: Complemental strand, 176317 - 176198
Alignment:
Q  41 tgagcaaggacgcataagtaatccctataaacccccaagctaaagttatgcagaggttcatctaaaccataattaggctgcaaaatctcttgataagact 140  Q
    |||||||||||||||| | |||||||| ||||||||||||| ||||||||||||||      || ||||||||  |||||  |||||||  |||| ||||    
T  176317 tgagcaaggacgcataggcaatccctagaaacccccaagctgaagttatgcagagg------tagaccataatcgggctgggaaatctcccgatacgact 176224  T
Q  141 cgtttcctaaatcaagagaaagaatg 166  Q
    | |||||||||| |||||||||||||    
T  176223 catttcctaaatgaagagaaagaatg 176198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 108 - 179
Target Start/End: Original strand, 1442234 - 1442305
Alignment:
Q  108 cataattaggctgcaaaatctcttgataagactcgtttcctaaatcaagagaaagaatgacccgtgaagagt 179  Q
    |||||| ||||  ||||||||||||||||||||| ||| ||||||||||||| ||||| | || ||||||||    
T  1442234 cataatcaggcaacaaaatctcttgataagactctttttctaaatcaagagagagaataatccatgaagagt 1442305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 107 - 166
Target Start/End: Original strand, 9819957 - 9820016
Alignment:
Q  107 ccataattaggctgcaaaatctcttgataagactcgtttcctaaatcaagagaaagaatg 166  Q
    ||||||| ||||||||||||||||||||| |||||  | || ||||||||||||| ||||    
T  9819957 ccataatcaggctgcaaaatctcttgataggactctctccccaaatcaagagaaacaatg 9820016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 107 - 166
Target Start/End: Original strand, 9825637 - 9825696
Alignment:
Q  107 ccataattaggctgcaaaatctcttgataagactcgtttcctaaatcaagagaaagaatg 166  Q
    ||||||| ||||||||||||||||||||| |||||  | || ||||||||||||| ||||    
T  9825637 ccataatcaggctgcaaaatctcttgataggactctgtccccaaatcaagagaaacaatg 9825696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 241 - 289
Target Start/End: Complemental strand, 176087 - 176039
Alignment:
Q  241 ttcgggttgacccatgagttgagaagggaagtctggaattgttctccaa 289  Q
    |||||||  |||||||||||| |||||||||||||||||  ||||||||    
T  176087 ttcgggtatacccatgagttgcgaagggaagtctggaatccttctccaa 176039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 202 - 234
Target Start/End: Original strand, 9825729 - 9825761
Alignment:
Q  202 ccaattaatggtgccacttacaaattttcctgg 234  Q
    ||||||||| |||||||||||||||||||||||    
T  9825729 ccaattaattgtgccacttacaaattttcctgg 9825761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 95 - 228
Target Start/End: Complemental strand, 55419711 - 55419578
Alignment:
Q  95 ggttcatctaaaccataattaggctgcaaaatctcttgataagactcgtttcctaaatcaagagaaagaatgacccgtgaagagtcattctctcgatcca 194  Q
    |||||||||| |||||| |  || |||  |||| ||||||||||||| ||||||||||| |||||||||||||||| |  | |||  |||||| ||||      
T  55419711 ggttcatctagaccatactcgggatgcggaatcacttgataagactcatttcctaaatccagagaaagaatgacccatagatagtatttctcttgatctt 55419612  T
Q  195 gtatgacccaattaatggtgccacttacaaattt 228  Q
     |||| ||||||||||||||||||||||||||||    
T  55419611 ctatggcccaattaatggtgccacttacaaattt 55419578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 123 - 228
Target Start/End: Complemental strand, 3926960 - 3926855
Alignment:
Q  123 aaatctcttgataagactcgtttcctaaatcaagagaaagaatgacccgtgaagagtcattctctcgatccagtatgacccaattaatggtgccacttac 222  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||| ||||   |  |||| | |||    |||| |||||||||| |||||||||||    
T  3926960 aaatctcttgataggactcgtttcctaaatcaagagaaagaatgacccatgaatcatagttcttttgattttctatggcccaattaattgtgccacttac 3926861  T
Q  223 aaattt 228  Q
    ||||||    
T  3926860 aaattt 3926855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0200 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 109 - 161
Target Start/End: Original strand, 903 - 955
Alignment:
Q  109 ataattaggctgcaaaatctcttgataagactcgtttcctaaatcaagagaaa 161  Q
    ||||||||||||||||| ||||||||||||||| || ||||||| ||||||||    
T  903 ataattaggctgcaaaacctcttgataagactcattccctaaattaagagaaa 955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 109 - 161
Target Start/End: Original strand, 41973595 - 41973647
Alignment:
Q  109 ataattaggctgcaaaatctcttgataagactcgtttcctaaatcaagagaaa 161  Q
    ||||||||||||||||| ||||||||||||||| || ||||||| ||||||||    
T  41973595 ataattaggctgcaaaacctcttgataagactcattccctaaattaagagaaa 41973647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 127 - 167
Target Start/End: Complemental strand, 2631260 - 2631220
Alignment:
Q  127 ctcttgataagactcgtttcctaaatcaagagaaagaatga 167  Q
    ||||||||| ||||| ||| |||||||||||||||||||||    
T  2631260 ctcttgatatgactcattttctaaatcaagagaaagaatga 2631220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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