View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13382_high_22 (Length: 395)
Name: NF13382_high_22
Description: NF13382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13382_high_22 |
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Alignment Details
Target: chr6 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 23 - 369
Target Start/End: Complemental strand, 3205285 - 3204939
Alignment:
| Q |
23 |
cacagatgaagattttgaggatgcaccgatttccttcatggtgtcaaagtattgagtcaccaacaccatgtccatgacatctttagcagttgttccggga |
122 |
Q |
| |
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||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3205285 |
cacagatgacgattttgaggatgcaccaatttccttcatggtgtcgaagtattgagtcaccaacaccatgtccatgacatctttagcagttgttccggga |
3205186 |
T |
|
| Q |
123 |
acattctctgagaatgctagcacactgtctctcagtccgtcaacaattgcttgacgttggcgagctataccgagtcctgacagatatttggactcagctt |
222 |
Q |
| |
|
||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3205185 |
acattctctgagaatgcaagcacgctgtctctcagtccgtcaacaattgcttgacgttggcgagctataccgagtcctgacagatatttggactcagctt |
3205086 |
T |
|
| Q |
223 |
ctccttcagctttcttgatctgcaatatcttttctgcttcagccttctcgttcgcagccaacctcattcttgcagctgttgattaaatcgttgtaaaaaa |
322 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
3205085 |
ctccttcagctttcttgatctgcaatatcttttctgcttcagccttctcgttcgcagccaacctcattcttgcagctgttgattaaatcgttgtaaacaa |
3204986 |
T |
|
| Q |
323 |
tgatcagaatattaaccgcaattactatggtcaatcaaaatttacac |
369 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
3204985 |
tgatcagaatattaactgcaattactatggtcaatcaaaatttacac |
3204939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 72; Significance: 1e-32; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 45 - 300
Target Start/End: Complemental strand, 44654733 - 44654478
Alignment:
| Q |
45 |
gcaccgatttccttcatggtgtcaaagtattgagtcaccaacaccatgtccatgacatctttagcagttgttccgggaacattctctgagaatgctagca |
144 |
Q |
| |
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||||| ||||| ||||| ||||||||||||||||| || | ||||| |||||||||||||| ||||| || || || ||||| |||| ||| | | || |
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| T |
44654733 |
gcaccaatttctttcatagtgtcaaagtattgagtgacaaggaccatatccatgacatcttttgcagtcgtccctggtacattaactgaaaatccaatca |
44654634 |
T |
|
| Q |
145 |
cactgtctctcagtccgtcaacaattgcttgacgttggcgagctataccgagtcctgacagatatttggactcagcttctccttcagctttcttgatctg |
244 |
Q |
| |
|
|||||||||||| || || ||||| |||||||| |||||||| ||||| | || || |||||||| |||||||| || || || ||| ||| || || |
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| T |
44654633 |
cactgtctctcaaaccatccacaatcgcttgacgctggcgagcaatacccaacccagagagatatttagactcagcctcaccctcggctcgcttaatttg |
44654534 |
T |
|
| Q |
245 |
caatatcttttctgcttcagccttctcgttcgcagccaacctcattcttgcagctg |
300 |
Q |
| |
|
||| || || ||||||||||||||||| || || |||||||||||||||||||||| |
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|
| T |
44654533 |
caagattttctctgcttcagccttctctttagctgccaacctcattcttgcagctg |
44654478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 51 - 300
Target Start/End: Complemental strand, 44683526 - 44683277
Alignment:
| Q |
51 |
atttccttcatggtgtcaaagtattgagtcaccaacaccatgtccatgacatctttagcagttgttccgggaacattctctgagaatgctagcacactgt |
150 |
Q |
| |
|
||||| ||||| ||||||||||||||||| || | ||||| |||||||||||||| ||||| || || || ||||| |||| ||| | | |||||||| |
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|
| T |
44683526 |
atttctttcatagtgtcaaagtattgagtgacaaggaccatatccatgacatcttttgcagtcgtccctggtacattaactgaaaatccaatcacactgt |
44683427 |
T |
|
| Q |
151 |
ctctcagtccgtcaacaattgcttgacgttggcgagctataccgagtcctgacagatatttggactcagcttctccttcagctttcttgatctgcaatat |
250 |
Q |
| |
|
|||||| || || ||||| |||||||| |||||||| ||||| | || || |||||||| |||||||| || || || ||| ||| || ||||| || |
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|
| T |
44683426 |
ctctcaaaccatccacaatggcttgacgctggcgagcaatacccaacccagagagatatttagactcagcctcaccctcggctcgcttaatttgcaagat |
44683327 |
T |
|
| Q |
251 |
cttttctgcttcagccttctcgttcgcagccaacctcattcttgcagctg |
300 |
Q |
| |
|
|| ||||||||||||||||| || || |||||||||||||||||||||| |
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|
| T |
44683326 |
tttctctgcttcagccttctctttagctgccaacctcattcttgcagctg |
44683277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 45 - 299
Target Start/End: Complemental strand, 44693264 - 44693010
Alignment:
| Q |
45 |
gcaccgatttccttcatggtgtcaaagtattgagtcaccaacaccatgtccatgacatctttagcagttgttccgggaacattctctgagaatgctagca |
144 |
Q |
| |
|
||||| ||||| ||||| ||||||||||||||||| || | ||||| |||||||||||||| ||| ||| || || ||||||||||| ||| | | || |
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|
| T |
44693264 |
gcaccaatttctttcatagtgtcaaagtattgagtgacaaggaccatatccatgacatcttttgcacttggccctggtacattctctgaaaatccaatca |
44693165 |
T |
|
| Q |
145 |
cactgtctctcagtccgtcaacaattgcttgacgttggcgagctataccgagtcctgacagatatttggactcagcttctccttcagctttcttgatctg |
244 |
Q |
| |
|
|||||||||||| || || ||||| ||||||||||| ||||| ||||| | || || |||||||| |||||||| || || || ||| ||| || || |
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| T |
44693164 |
cactgtctctcaaaccatctacaatggcttgacgttgacgagcaatacccatcccagagagatatttagactcagcctcaccctcggctcgctttatttg |
44693065 |
T |
|
| Q |
245 |
caatatcttttctgcttcagccttctcgttcgcagccaacctcattcttgcagct |
299 |
Q |
| |
|
||| || || ||||||||||||||||| || || || | |||||||||||||||| |
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|
| T |
44693064 |
caagattttctctgcttcagccttctcattagctgcgatcctcattcttgcagct |
44693010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 63 - 300
Target Start/End: Complemental strand, 44632849 - 44632612
Alignment:
| Q |
63 |
gtgtcaaagtattgagtcaccaacaccatgtccatgacatctttagcagttgttccgggaacattctctgagaatgctagcacactgtctctcagtccgt |
162 |
Q |
| |
|
||||||||||||||||| || | ||||| |||||||||||||| ||| |||| || || ||||| | |||||| | | |||||||||||||| || | |
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|
| T |
44632849 |
gtgtcaaagtattgagtgacaaggaccatatccatgacatcttttgcacttgtccctggtacattaaccgagaatccaatcacactgtctctcaaaccat |
44632750 |
T |
|
| Q |
163 |
caacaattgcttgacgttggcgagctataccgagtcctgacagatatttggactcagcttctccttcagctttcttgatctgcaatatcttttctgcttc |
262 |
Q |
| |
|
| ||||| ||||||||||||||||| ||||| | || || ||||||||||||||||| || || || ||| ||| || ||||| ||||| ||||| || |
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|
| T |
44632749 |
ccacaatggcttgacgttggcgagcaatacccatcccagagagatatttggactcagcctcaccctcggctcgctttatttgcaagatcttctctgcctc |
44632650 |
T |
|
| Q |
263 |
agccttctcgttcgcagccaacctcattcttgcagctg |
300 |
Q |
| |
|
|| ||||| || || || ||||||||||||||||||| |
|
|
| T |
44632649 |
cgctttctccttagctgctaacctcattcttgcagctg |
44632612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 30 - 193
Target Start/End: Original strand, 44635960 - 44636123
Alignment:
| Q |
30 |
gaagattttgaggatgcaccgatttccttcatggtgtcaaagtattgagtcaccaacaccatgtccatgacatctttagcagttgttccgggaacattct |
129 |
Q |
| |
|
|||||||| |||| ||||| ||||| ||||| ||||||||||||||||| || | |||| |||||||||||||||||| |||| || || ||||| |
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|
| T |
44635960 |
gaagatttggaggcagcaccaatttctttcatagtgtcaaagtattgagtgacaaggaccaaatccatgacatctttagcacttgtccctggtacattaa |
44636059 |
T |
|
| Q |
130 |
ctgagaatgctagcacactgtctctcagtccgtcaacaattgcttgacgttggcgagctatacc |
193 |
Q |
| |
|
|||| ||| | | |||||||||||||| || || ||||| ||||||||||| ||||| ||||| |
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|
| T |
44636060 |
ctgaaaatccaatcacactgtctctcaaaccatccacaatggcttgacgttgacgagcaatacc |
44636123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 45 - 193
Target Start/End: Complemental strand, 44625578 - 44625430
Alignment:
| Q |
45 |
gcaccgatttccttcatggtgtcaaagtattgagtcaccaacaccatgtccatgacatctttagcagttgttccgggaacattctctgagaatgctagca |
144 |
Q |
| |
|
||||| ||||| ||||| ||||||||||||||||| || | ||||| |||||||||||||| ||||| || || || ||||| |||| ||| | | || |
|
|
| T |
44625578 |
gcaccaatttctttcatagtgtcaaagtattgagtgacaaggaccatatccatgacatcttttgcagtcgtccctggtacattaactgaaaatccaatca |
44625479 |
T |
|
| Q |
145 |
cactgtctctcagtccgtcaacaattgcttgacgttggcgagctatacc |
193 |
Q |
| |
|
|||||||||||| || || ||||| |||||||| |||||||| ||||| |
|
|
| T |
44625478 |
cactgtctctcaaaccatccacaatcgcttgacgctggcgagcaatacc |
44625430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 36 - 299
Target Start/End: Original strand, 25102988 - 25103251
Alignment:
| Q |
36 |
tttgaggatgcaccgatttccttcatggtgtcaaagtattgagtcaccaacaccatgtccatgacatctttagcagttgttccgggaacattctctgaga |
135 |
Q |
| |
|
||||||||||| || || ||||||| |||||||||||||| ||||| | ||||||||||||||||| || | | ||| ||||| |||||||||| | |
|
|
| T |
25102988 |
tttgaggatgcgccaatctccttcaatgtgtcaaagtattgggtcacaagaaccatgtccatgacatcctttgatgatgtcccggggacattctctgcaa |
25103087 |
T |
|
| Q |
136 |
atgctagcacactgtctctcagtccgtcaacaattgcttgacgttggcgagctataccgagtcctgacagatatttggactcagcttctccttcagcttt |
235 |
Q |
| |
|
||||||| |||||||| || || |||||||| || |||||||| || |||||||| || || |||| ||||| || || || || ||||| || || | |
|
|
| T |
25103088 |
atgctagaacactgtccctaagcccgtcaactatggcttgacgctgacgagctattccaagccctgctagatactttgattctgcatctccctctgccct |
25103187 |
T |
|
| Q |
236 |
cttgatctgcaatatcttttctgcttcagccttctcgttcgcagccaacctcattcttgcagct |
299 |
Q |
| |
|
|| || |||| ||||| ||||||||||| ||||| | ||||||| ||| | |||||||||| |
|
|
| T |
25103188 |
ttttatgtgcagaatcttctctgcttcagctttctcacttgcagccatcctaaatcttgcagct |
25103251 |
T |
|
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