View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13382_high_26 (Length: 368)
Name: NF13382_high_26
Description: NF13382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13382_high_26 |
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Alignment Details
Target: chr4 (Bit Score: 304; Significance: 1e-171; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 11 - 350
Target Start/End: Complemental strand, 37778743 - 37778409
Alignment:
| Q |
11 |
agaaaagaagcaaaatggacctatcaaagtaaacagcaaggggaacagtgaaagccgctgcaaaactgaggcggtaagcggtagccaccctcatactcat |
110 |
Q |
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| T |
37778743 |
agaaaagaagcaaaatggacctatcaaagtaaacagcaaggggaacagtgaaagccgctgcaaaactgaggcggtaagcggtggccaccctcatgctcat |
37778644 |
T |
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| Q |
111 |
tccatcgtttatgacgagcttgtacatgatattcacagcagcaaatgcaatctggcaaaccaccattaacaccactggttttagtccttgcaatgaattg |
210 |
Q |
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| T |
37778643 |
tccatcgtttatgacgagcttgtacatgatattcacagcagcaaatgcaatctggcaaaccaccattaacaccactggttttagtccttgcaatgaattg |
37778544 |
T |
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| Q |
211 |
caaattatcctcttcatatttatgatatatatttgttatgttattgggttttgagagtactcaagaaaatagagagaattgaagatgaagagaagaaaat |
310 |
Q |
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| T |
37778543 |
caaattatcctcttcatatttatgatatatatttgttatgttattaggttttgagagtactcaagaaaatagaga-----gaagatgaagagaagaaaat |
37778449 |
T |
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| Q |
311 |
taaagtgtagaacaacattgaagtgtttatatatatgcag |
350 |
Q |
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| T |
37778448 |
taaagtgtagaacaacattgaagtgtgtatatatatgcag |
37778409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 17 - 210
Target Start/End: Complemental strand, 37806543 - 37806350
Alignment:
| Q |
17 |
gaagcaaaatggacctatcaaagtaaacagcaaggggaacagtgaaagccgctgcaaaactgaggcggtaagcggtagccaccctcatactcattccatc |
116 |
Q |
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| T |
37806543 |
gaagcaaaatgaacctatcaaagataaaagcaagaggaatagtgaaagctgatgcaaaagcgaggcggtaggcagaagcaaccctcatactcatcccatc |
37806444 |
T |
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| Q |
117 |
gtttatgacgagcttgtacatgatattcacagcagcaaatgcaatctggcaaaccaccattaacaccactggttttagtccttgcaatgaattg |
210 |
Q |
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| T |
37806443 |
atttataacgagcttgtacatgatattcacagcagcatatgcaatctgcacaaacaacattaggatgattggttttagtgcttgcaatgaattg |
37806350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 52 - 206
Target Start/End: Complemental strand, 37796468 - 37796314
Alignment:
| Q |
52 |
ggaacagtgaaagccgctgcaaaactgaggcggtaagcggtagccaccctcatactcattccatcgtttatgacgagcttgtacatgatattcacagcag |
151 |
Q |
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| T |
37796468 |
ggaatagtgaaagctgatgcacaaatgaggcggtaagcagtcgcaaccctcatactcatcccatcatttataacgagcttgcacatgatattcatagcag |
37796369 |
T |
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| Q |
152 |
caaatgcaatctggcaaaccaccattaacaccactggttttagtccttgcaatga |
206 |
Q |
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| T |
37796368 |
catatgcaatctgcacaaacaccataacaatgactggttttagtccttgcaatga |
37796314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 29 - 209
Target Start/End: Complemental strand, 37785849 - 37785669
Alignment:
| Q |
29 |
acctatcaaagtaaacagcaaggggaacagtgaaagccgctgcaaaactgaggcggtaagcggtagccaccctcatactcattccatcgtttatgacgag |
128 |
Q |
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| T |
37785849 |
acctatcaaagataagagcaagaggaatggtgaaagctgatgcaaaagtgagacggtaagcagtggccaccctcatgctcatcccatcatttatggcaag |
37785750 |
T |
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| Q |
129 |
cttgtacatgatattcacagcagcaaatgcaatctggcaaaccaccattaacaccactggttttagtccttgcaatgaatt |
209 |
Q |
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| T |
37785749 |
cttgcatatgatattcacagctgcacctgcaatctgcacaaacaacattaggatcactggttttactccttccaatgaatt |
37785669 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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