View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13382_high_27 (Length: 352)
Name: NF13382_high_27
Description: NF13382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13382_high_27 |
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| [»] scaffold0190 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 306; Significance: 1e-172; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 334
Target Start/End: Original strand, 15190298 - 15190631
Alignment:
| Q |
1 |
aacactttaaacggtctctttaccgtgcccttgcattctttccaccctttgctggtcgtctcgaaattacagaacacgaagataacactatctcgtgttc |
100 |
Q |
| |
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|||||||||||| |||||||| | |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
15190298 |
aacactttaaacagtctctttcctgtgcccttgcattctttccaccctttactggtcgtctcgaaattacagaacacgaagataacactatttcgtgttc |
15190397 |
T |
|
| Q |
101 |
ccttgcatgcaacaatgctggtgcactctttgttcatgcaaaagcagagaacacatgtgttgccgacattctaggatccacctaccttccttccgttttc |
200 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
15190398 |
ccttgcatgcaaaaatgctggtgcactctttgttcatgcaaaagcagagaacacatgtgttgccgacattctaggatccacctaccttccttcctttttc |
15190497 |
T |
|
| Q |
201 |
cactccttctttccacttaacggagttataaactacgaaggtacatcacatccattgcttgcattccaagtaacagagttaagtgacggtacttttgtta |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15190498 |
cactccttctttccacttaacggagttataaactacgaaggtacatcacatccattgcttgcattccaagtaacagagttaagtgacggtacttttgtta |
15190597 |
T |
|
| Q |
301 |
gttggacaatgaaccatgtagtccttgatggaat |
334 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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| T |
15190598 |
gttggacaatgaaccatgtagtccttgatggaat |
15190631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 28 - 277
Target Start/End: Original strand, 15744112 - 15744361
Alignment:
| Q |
28 |
cccttgcattctttccaccctttgctggtcgtctcgaaattacagaacacgaagataacactatctcgtgttcccttgcatgcaacaatgctggtgcact |
127 |
Q |
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|||||| ||| |||||||||||| ||||||||||| |||| | |||||||||||||||||||||||||||||| | | |||||||||| ||||||||| |
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| T |
15744112 |
cccttgaattttttccaccctttactggtcgtctcaaaatcaaggaacacgaagataacactatctcgtgttccatcacgtgcaacaatgttggtgcact |
15744211 |
T |
|
| Q |
128 |
ctttgttcatgcaaaagcagagaacacatgtgttgccgacattctaggatccacctaccttccttccgttttccactccttctttccacttaacggagtt |
227 |
Q |
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||||||||||| |||||| || || |||| | ||||| | ||| |||| || | |||| || ||||||| || |||||| |||||||||| |
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| T |
15744212 |
atttgttcatgctgcagcagaaaataccagtgtcgatgacatcattggagccacgtatcatcctaaaattctccactcattttttccatttaacggagtg |
15744311 |
T |
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| Q |
228 |
ataaactacgaaggtacatcacatccattgcttgcattccaagtaacaga |
277 |
Q |
| |
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| |||||||||||| |||||| ||||| |||||| | ||||||||||| |
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| T |
15744312 |
aaaaactacgaagggacatcaatgccattacttgcagtacaagtaacaga |
15744361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 219 - 291
Target Start/End: Complemental strand, 34174908 - 34174836
Alignment:
| Q |
219 |
aacggagttataaactacgaaggtacatcacatccattgcttgcattccaagtaacagagttaagtgacggta |
291 |
Q |
| |
|
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| T |
34174908 |
aacggagttaaaaactacaaaggtacatcacaaccattgcttgcagttcaagtaacagagttaattgatggta |
34174836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 199 - 281
Target Start/End: Complemental strand, 11969718 - 11969636
Alignment:
| Q |
199 |
tccactccttctttccacttaacggagttataaactacgaaggtacatcacatccattgcttgcattccaagtaacagagtta |
281 |
Q |
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||||||| || ||||||||||||||||||| |||||| ||||| |||||| | |||||||||||| ||||||||||||||||| |
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| T |
11969718 |
tccactcattttttccacttaacggagttagaaactatgaagggacatcagagccattgcttgcagtccaagtaacagagtta |
11969636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000008; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 57 - 185
Target Start/End: Original strand, 8935268 - 8935396
Alignment:
| Q |
57 |
cgtctcgaaattacagaacacgaagataacactatctcgtgttcccttgcatgcaacaatgctggtgcactctttgttcatgcaaaagcagagaacacat |
156 |
Q |
| |
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|||||| |||| || ||| || |||| || ||| ||||||| ||| || |||||||||||| |||| ||||||||| ||||| | | ||||||| || | |
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| T |
8935268 |
cgtctcaaaataacggaataccaagacaaaactgtctcgtgctccgttatatgcaacaatgcaggtgtactctttgtccatgccagatcagagaatactt |
8935367 |
T |
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| Q |
157 |
gtgttgccgacattctaggatccacctac |
185 |
Q |
| |
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||||||| |||||||||| | |||||||| |
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| T |
8935368 |
gtgttgctgacattctagaacccacctac |
8935396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 54 - 185
Target Start/End: Original strand, 8934324 - 8934455
Alignment:
| Q |
54 |
ggtcgtctcgaaattacagaacacgaagataacactatctcgtgttcccttgcatgcaacaatgctggtgcactctttgttcatgcaaaagcagagaaca |
153 |
Q |
| |
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||||||||| |||| || ||| || |||| || ||| ||||||| ||| || |||||||||||| | || ||||||||| ||||| | | ||||||| | |
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| T |
8934324 |
ggtcgtctcaaaataacggaataccaagacaaaactgtctcgtgctccgttatatgcaacaatgcagatgtactctttgtccatgccagatcagagaata |
8934423 |
T |
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| Q |
154 |
catgtgttgccgacattctaggatccacctac |
185 |
Q |
| |
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| |||||||| |||||||||| | |||||||| |
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| T |
8934424 |
cttgtgttgctgacattctagaacccacctac |
8934455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 107 - 185
Target Start/End: Original strand, 8929922 - 8930000
Alignment:
| Q |
107 |
atgcaacaatgctggtgcactctttgttcatgcaaaagcagagaacacatgtgttgccgacattctaggatccacctac |
185 |
Q |
| |
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|||||||||||| | || ||||||||||||||| | | ||||||| || |||||||| |||||||||| | |||||||| |
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| T |
8929922 |
atgcaacaatgcagttgtactctttgttcatgccagatcagagaatacttgtgttgctgacattctagaacccacctac |
8930000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 57 - 185
Target Start/End: Complemental strand, 7638019 - 7637891
Alignment:
| Q |
57 |
cgtctcgaaattacagaacacgaagataacactatctcgtgttcccttgcatgcaacaatgctggtgcactctttgttcatgcaaaagcagagaacacat |
156 |
Q |
| |
|
|||||| |||| || |||||| ||| |||||| | ||||||||| || |||||||||||| |||| ||||||||| ||||| ||||||||| || | |
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| T |
7638019 |
cgtctcaaaataacggaacacagagacaacactgtttcgtgttccgttatatgcaacaatgcaggtgtactctttgtccatgccgcagcagagaatactt |
7637920 |
T |
|
| Q |
157 |
gtgttgccgacattctaggatccacctac |
185 |
Q |
| |
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||||||| ||||| |||| | |||||||| |
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|
| T |
7637919 |
gtgttgcagacatcctagaacccacctac |
7637891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 282
Target Start/End: Complemental strand, 7399249 - 7399197
Alignment:
| Q |
230 |
aaactacgaaggtacatcacatccattgcttgcattccaagtaacagagttaa |
282 |
Q |
| |
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|||||||||||| |||||||| ||| | |||||| | |||||||||||||||| |
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| T |
7399249 |
aaactacgaagggacatcacaaccactacttgcagtacaagtaacagagttaa |
7399197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 57 - 281
Target Start/End: Complemental strand, 8103428 - 8103204
Alignment:
| Q |
57 |
cgtctcgaaattacagaacacgaagataacactatctcgtgttcccttgcatgcaacaatgctggtgcactctttgttcatgcaaaagcagagaacacat |
156 |
Q |
| |
|
||||| ||||| ||||| || ||||| ||||| || |||||||| | | ||||||||||| |||| ||||||||| ||||| | | | |||||||| | |
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|
| T |
8103428 |
cgtctagaaataacagaccatgaagacaacaccatgtcgtgttcggtcacgtgcaacaatgccggtgtactctttgtccatgctacaactgagaacactt |
8103329 |
T |
|
| Q |
157 |
gtgttgccgacattctaggatccacctaccttccttccgttttccactccttctttccacttaacggagttataaactacgaaggtacatcacatccatt |
256 |
Q |
| |
|
|||| | ||||| || |||| |||||| ||||| || || || | || || | |||||| |||||| | | |||||||||||| |||||||| ||||| |
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| T |
8103328 |
gtgtaggtgacatacttggatgcacctatattcctcccattctcaattcattttatccactgaacggaatcaaaaactacgaaggcacatcacaaccatt |
8103229 |
T |
|
| Q |
257 |
gcttgcattccaagtaacagagtta |
281 |
Q |
| |
|
| |||| | ||||| ||||||||| |
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|
| T |
8103228 |
gtttgccgtgcaagtgacagagtta |
8103204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0190 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0190
Description:
Target: scaffold0190; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 222 - 281
Target Start/End: Complemental strand, 5219 - 5160
Alignment:
| Q |
222 |
ggagttataaactacgaaggtacatcacatccattgcttgcattccaagtaacagagtta |
281 |
Q |
| |
|
||||||| |||||||||||| |||||||| ||||| |||||| |||||||||| |||||| |
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| T |
5219 |
ggagttaaaaactacgaaggaacatcacaaccattacttgcaatccaagtaacggagtta |
5160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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