View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13382_high_41 (Length: 254)
Name: NF13382_high_41
Description: NF13382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13382_high_41 |
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Alignment Details
Target: chr7 (Bit Score: 156; Significance: 6e-83; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 19 - 194
Target Start/End: Complemental strand, 46651456 - 46651281
Alignment:
| Q |
19 |
agtacgatcaggtgattctaatcatgcagctgttcctattaaaatgaggagattgactgcttgtgccaaggcagagaaaagctgcataactgagaattct |
118 |
Q |
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| T |
46651456 |
agtacgatcaggtgattctaatcatgcagttgttcctattaaaaggagaagattgactgcttgtgccaaggcagagaaaagctgcataactgagaattct |
46651357 |
T |
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| Q |
119 |
tcaggaggtttgggatcagacaaactaagattctctcggtcttctagctttctcgttgccagcaaaaatgtttgtg |
194 |
Q |
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| T |
46651356 |
tcaggaggtttgggatcagacaaactaagattctctcagtcttctagctttctcgttgccaacaaaaatgtttgtg |
46651281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 19 - 194
Target Start/End: Complemental strand, 46173502 - 46173327
Alignment:
| Q |
19 |
agtacgatcaggtgattctaatcatgcagctgttcctattaaaatgaggagattgactgcttgtgccaaggcagagaaaagctgcataactgagaattct |
118 |
Q |
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|||| |||||||||| ||| ||||||||| |||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||| | |||||||||| |
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| T |
46173502 |
agtaagatcaggtgactctgatcatgcagttgttcctattaaaaggaggagattgactgattgtgccaaggaagagaaaagctgcatcattgagaattct |
46173403 |
T |
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| Q |
119 |
tcaggaggtttgggatcagacaaactaagattctctcggtcttctagctttctcgttgccagcaaaaatgtttgtg |
194 |
Q |
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| T |
46173402 |
tcaggaggtctgggatcagataaactacgaatttctcgatcttctagctttcgagttgccaacccaaatgtttgtg |
46173327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 29 - 192
Target Start/End: Complemental strand, 46642314 - 46642151
Alignment:
| Q |
29 |
ggtgattctaatcatgcagctgttcctattaaaatgaggagattgactgcttgtgccaaggcagagaaaagctgcataactgagaattcttcaggaggtt |
128 |
Q |
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| T |
46642314 |
ggtgattctaatcatgcagctgttcctattaaaaggaggagattaactgcttgtgtcaaggcagaaaaaagccacatcactgagaattcttcagtaggtt |
46642215 |
T |
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| Q |
129 |
tgggatcagacaaactaagattctctcggtcttctagctttctcgttgccagcaaaaatgtttg |
192 |
Q |
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||||||| || ||||| ||||||||| ||||||||||||| | ||||| | |||||||||| |
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| T |
46642214 |
tgggatcggataaactgggattctctcattcttctagctttcaagatgccaaccaaaatgtttg |
46642151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 26 - 129
Target Start/End: Original strand, 46638483 - 46638586
Alignment:
| Q |
26 |
tcaggtgattctaatcatgcagctgttcctattaaaatgaggagattgactgcttgtgccaaggcagagaaaagctgcataactgagaattcttcaggag |
125 |
Q |
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| T |
46638483 |
tcaggtgattctaatcatgcagccgttcctattaaacggaggaaattgactgcttgtgtcaaatcagagaaaagccgcattgttgagaattcttcaggat |
46638582 |
T |
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| Q |
126 |
gttt |
129 |
Q |
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|||| |
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| T |
46638583 |
gttt |
46638586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 19 - 129
Target Start/End: Original strand, 46619758 - 46619868
Alignment:
| Q |
19 |
agtacgatcaggtgattctaatcatgcagctgttcctattaaaatgaggagattgactgcttgtgccaaggcagagaaaagctgcataactgagaattct |
118 |
Q |
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|||| |||| |||||||||||||||||||| |||||||||||| ||||| |||||||||||||||||| |||||||||| |||| |||||||||| |
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| T |
46619758 |
agtaagatctggtgattctaatcatgcagccgttcctattaaacggaggaaattgactgcttgtgccaaatcagagaaaagtcgcattgttgagaattct |
46619857 |
T |
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| Q |
119 |
tcaggaggttt |
129 |
Q |
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|||||| |||| |
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| T |
46619858 |
tcaggatgttt |
46619868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 192 - 254
Target Start/End: Complemental strand, 46651226 - 46651164
Alignment:
| Q |
192 |
gtgtggaagagaataaagataagagcatttgcaacggaaattatcaatatacatgtggttatt |
254 |
Q |
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| T |
46651226 |
gtgtggaagagaataaagaaaagagcatttgcaacggcaattatcaatatacatatgattatt |
46651164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 19 - 165
Target Start/End: Complemental strand, 15768685 - 15768539
Alignment:
| Q |
19 |
agtacgatcaggtgattctaatcatgcagctgttcctattaaaatgaggagattgactgcttgtgccaaggcagagaaaagctgcataactgagaattct |
118 |
Q |
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|||| |||||||||| |||||| || ||| |||||||||||||| ||| |||||||||||||||||||||| |||||||||| |||| |||||||||| |
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| T |
15768685 |
agtaagatcaggtgactctaataatacagttgttcctattaaaaggagaagattgactgcttgtgccaaggaagagaaaagccgcattgttgagaattct |
15768586 |
T |
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| Q |
119 |
tcaggaggtttgggatcagacaaactaagattctctcggtcttctag |
165 |
Q |
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|||||||||||||||||||| || || |||| |||| ||||||||| |
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| T |
15768585 |
tcaggaggtttgggatcagataatcttggattttctccgtcttctag |
15768539 |
T |
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