View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13382_high_6 (Length: 630)
Name: NF13382_high_6
Description: NF13382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13382_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 328 - 609
Target Start/End: Complemental strand, 31474781 - 31474500
Alignment:
| Q |
328 |
caaaaagaacaaaacaaaccctaatctcataaaccctaaatccccttcttcaaaatcacttcgacccacttcctcaaaacctccaatttcgaacctttca |
427 |
Q |
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| T |
31474781 |
caaaaagaacaaaacaaaccctaatctcataaaccctaaatccccttcttcaaaatcacctcgacccacttcctcaaaaccttcaatttcgaacctttca |
31474682 |
T |
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| Q |
428 |
cccaaaacaaccctttacacattgctaaccgaccttgtttcttgccccactgacacagacactgccattgacaatgttttggattgttacaaagcagagt |
527 |
Q |
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| T |
31474681 |
cccaaaacaaccctttacacattgctaaccgaccttgtttcttgccccactgacacagacactgccattgacaatgttttggattgttacaaagcagagt |
31474582 |
T |
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| Q |
528 |
taacctctgaccttgtacttcgtgtcttgatgagttacaatcacttgggtagaaccaaaacattgaaatttttctcatgggc |
609 |
Q |
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| T |
31474581 |
taacctctgaccttgtacttcgtgtcttgatgagttacaatcacttgggtagaaccaaaacattgaaatttttctcatgggc |
31474500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 60 - 263
Target Start/End: Complemental strand, 31475051 - 31474846
Alignment:
| Q |
60 |
catcaagtccaaacaatgaaaacctctcaaattttcctttccataattcattttcaccgtttttctcttaaccnnnnnnnnnnnnnnnnnnnnnnnnntt |
159 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || |
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| T |
31475051 |
catcaagtccaaacaatgaaaacctctcaaattctcctttccataattcattttcaccgtttttctcttaacccaaacaaaagaaaaacaaaacaaaatt |
31474952 |
T |
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| Q |
160 |
caaccttctccagtttcctaagaa--gaatcgaacagagacacgacaaggaatcgcaggttgtcttcggaaaattcgaatgattctttgtagaacaaaaa |
257 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31474951 |
caaccttctccagtttcctaagaaaagaatcgaacagagacacgacaaggaatcgcaggttgtcttcggaaaattcgaatgattctttgtagaacaaaaa |
31474852 |
T |
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| Q |
258 |
atgctg |
263 |
Q |
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|||||| |
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| T |
31474851 |
atgctg |
31474846 |
T |
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