View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13382_high_8 (Length: 617)
Name: NF13382_high_8
Description: NF13382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13382_high_8 |
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Alignment Details
Target: chr7 (Bit Score: 555; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 555; E-Value: 0
Query Start/End: Original strand, 13 - 602
Target Start/End: Original strand, 2044790 - 2045382
Alignment:
| Q |
13 |
aagaatatgatataatttgtctttgtaattagggcaatggaagcggcaatgaaagcagaagcaaatgacacaaggagggaactaatgagccaaaaatcac |
112 |
Q |
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| T |
2044790 |
aagaatatgatataatttgtctttgtaattagggcaatggaagcggcaatgaaagcagaagcaaatgacacaaggagggaactaatgagccaaaaatcac |
2044889 |
T |
|
| Q |
113 |
gtggtggtaaagg---tcgtagagcaagatgtatggccaccaatccaattgacagttgttggaggtgtagaaatgattgggccaaaaaccgtcaactgtt |
209 |
Q |
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| T |
2044890 |
gtggtggtaaaggacgtcgtagagcaagatgtatggccaccaatccaattgacagttgttggaggtgtagaaatgattgggccaaaaaccgtcaactgtt |
2044989 |
T |
|
| Q |
210 |
agccacatgtgcaaaaggattcggtagaaggactacaggaggacttggtggaaagatctatattgtcacagatccttccgacaatgatatggtgaaccca |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| ||| ||||||||||| |
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| T |
2044990 |
agccacatgtgcaaaaggattcggtagaaggactacaggaggacttggtggaaggatctatgttgtcacagatccttccgacaacgatttggtgaaccca |
2045089 |
T |
|
| Q |
310 |
agacctggaactctccgatttggtgccgttcaaaagggaccacttcggattattttccaacgtaacatggtcattacattgactcaagagttaatggttt |
409 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2045090 |
agacctggaactctccgatttggtgccgttcaaaagggaccactttggattattttccaacgtaacatggtcattacattgactcaagagttaatggttt |
2045189 |
T |
|
| Q |
410 |
catccgacaagaccatcgatggtcgtggagccaatgtgcaaattagggaaggtgctggaattaccatgcaattcgtcaacaatgtcatcattcacggtct |
509 |
Q |
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| T |
2045190 |
catccgacaagaccatcgacggtcgtggagccaatgtgcaaattagggaaggtgctggaattaccatgcaattcgtcaacaatgtcatcattcacggtct |
2045289 |
T |
|
| Q |
510 |
tcgcatcaagaacattaaagctaagaatggtggtttgattagagactctttcgatcatctcggagtaagaacaaggagtgatggtgatgctat |
602 |
Q |
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| T |
2045290 |
tcgcatcaagaacattaaagctaagaatggtggtttgattagagactctttcgatcatctcggagtaagaacaaggagtgatggtgatgctat |
2045382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 13 - 117
Target Start/End: Complemental strand, 2286991 - 2286881
Alignment:
| Q |
13 |
aagaatatgatataatttgtctttgtaattagggcaatggaagcggcaatgaaagcagaag------caaatgacacaaggagggaactaatgagccaaa |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||| |
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| T |
2286991 |
aagaatatgatataatttgtctttgtaattagggcaatggaagcggcaatgaaagcagaagcacaatcaaatgacacagggaaggaactaatgagccaaa |
2286892 |
T |
|
| Q |
107 |
aatcacgtggt |
117 |
Q |
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| T |
2286891 |
aatcacgtggt |
2286881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 79; Significance: 1e-36; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 292 - 602
Target Start/End: Complemental strand, 3225396 - 3225086
Alignment:
| Q |
292 |
aatgatatggtgaacccaagacctggaactctccgatttggtgccgttcaaaagggaccacttcggattattttccaacgtaacatggtcattacattga |
391 |
Q |
| |
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||||| ||||| ||||| | ||||||||| || |||||||||| || |||||||||||| | |||| | ||| ||||| ||||||||||| ||||| |
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| T |
3225396 |
aatgacatggtaaaccctaaacctggaacccttagatttggtgctgtccaaaagggaccattatggatcacttttgcacgtagcatggtcattagattga |
3225297 |
T |
|
| Q |
392 |
ctcaagagttaatggtttcatccgacaagaccatcgatggtcgtggagccaatgtgcaaattagggaaggtgctggaattaccatgcaattcgtcaacaa |
491 |
Q |
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||||| || |||||||| || ||||| || || |||||||||||||| ||||| ||||||||||| |||||||||||||| |||||||| || || || |
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| T |
3225296 |
accaagaattgatggtttcttctgacaaaacaattgatggtcgtggagctaatgttcaaattagggatggtgctggaattacaatgcaatttgttaataa |
3225197 |
T |
|
| Q |
492 |
tgtcatcattcacggtcttcgcatcaagaacattaaagctaagaatggtggtttgattagagactctttcgatcatctcggagtaagaacaaggagtgat |
591 |
Q |
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||| |||||||| || |||| || | || ||||||||||| |||||||||||||| || ||||| || ||| ||| ||||||||| |||||| |
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| T |
3225196 |
tgttatcattcatggacttcatattcaaaatattaaagctaaaccaggtggtttgattagggattcttttgaccatactggacaaagaacaagaagtgat |
3225097 |
T |
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| Q |
592 |
ggtgatgctat |
602 |
Q |
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||||||||||| |
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| T |
3225096 |
ggtgatgctat |
3225086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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