View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13382_low_1 (Length: 993)

Name: NF13382_low_1
Description: NF13382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13382_low_1
NF13382_low_1
[»] chr6 (4 HSPs)
chr6 (384-967)||(3204939-3205521)
chr6 (10-381)||(3205547-3205921)
chr6 (150-230)||(2428031-2428112)
chr6 (152-230)||(24766018-24766096)
[»] chr4 (8 HSPs)
chr4 (595-898)||(44654478-44654781)
chr4 (595-897)||(44693010-44693312)
chr4 (595-898)||(44683277-44683580)
chr4 (595-898)||(44632612-44632915)
chr4 (595-791)||(44625430-44625626)
chr4 (595-791)||(44635927-44636123)
chr4 (152-230)||(31052978-31053058)
chr4 (150-236)||(45994735-45994822)
[»] chr8 (2 HSPs)
chr8 (634-897)||(25102988-25103251)
chr8 (150-235)||(10172439-10172526)
[»] chr3 (1 HSPs)
chr3 (160-236)||(8173164-8173240)
[»] chr5 (1 HSPs)
chr5 (150-212)||(14717331-14717393)
[»] chr2 (2 HSPs)
chr2 (123-236)||(11603273-11603383)
chr2 (117-236)||(1465775-1465897)
[»] chr7 (1 HSPs)
chr7 (150-230)||(18358792-18358874)


Alignment Details
Target: chr6 (Bit Score: 530; Significance: 0; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 530; E-Value: 0
Query Start/End: Original strand, 384 - 967
Target Start/End: Complemental strand, 3205521 - 3204939
Alignment:
Q  384 aaagactgaaaaattgcaaattaccactcagactttaaaactagagtattatattcatctctaaaatataagtataaaaatgcacagcattcaaacataa 483  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  3205521 aaagactgaaaaattgcaaattaccactcagactttaaaactagagtattatattcatctctaaaatataagtataaaaatgcaaagcattcaaacataa 3205422  T
Q  484 gaagcattactatataatatatatgctgttcataataactccaa-aagcacttataagtttgcagcatttccctgaagaagaccatctctaatctgcaca 582  Q
    ||||||||||||||||||||||  |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3205421 gaagcattactatataatatat--gctgtttataataactccaataagcacttataagtttgcagcatttccctgaagaagaccatctctaatctgcaca 3205324  T
Q  583 gcaatgtccctgacagcaccaggaccatgtggaatgaacacagatgaagattttgaggatgcaccgatttccttcatggtgtcaaagtattgagtcacca 682  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||    
T  3205323 gcaatgtccctgacagcaccaggaccatgtggaatgaacacagatgacgattttgaggatgcaccaatttccttcatggtgtcgaagtattgagtcacca 3205224  T
Q  683 acaccatgtccatgacatctttagcagttgttccgggaacattctctgagaatgctagcacactgtctctcagtccgtcaacaattgcttgacgttggcg 782  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||    
T  3205223 acaccatgtccatgacatctttagcagttgttccgggaacattctctgagaatgcaagcacgctgtctctcagtccgtcaacaattgcttgacgttggcg 3205124  T
Q  783 agctataccgagtcctgacagatatttggactcagcttctccttcagctttcttgatctgcaatatcttttctgcttcagccttctcgttcgcagccaac 882  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3205123 agctataccgagtcctgacagatatttggactcagcttctccttcagctttcttgatctgcaatatcttttctgcttcagccttctcgttcgcagccaac 3205024  T
Q  883 ctcattcttgcagctgttgattaaatcgttgtaaaaaatgatcagaatattaaccgcaattactatggtcaatcaaaatttacac 967  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||    
T  3205023 ctcattcttgcagctgttgattaaatcgttgtaaacaatgatcagaatattaactgcaattactatggtcaatcaaaatttacac 3204939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 10 - 381
Target Start/End: Complemental strand, 3205921 - 3205547
Alignment:
Q  10 aagaatatcttactatgattacaaaatcattgacaaatttaagcaaaaatatattatttcttggtttaaagtgatgaccttacactttatctctcaattt 109  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||    
T  3205921 aagaatatcttactatgattacaaaataattgacaaatttaagcaaaaatatattatttcttggtttaaagtgatgatcttacactttatctctcatttt 3205822  T
Q  110 tcataaaattgagtttaattaatatactttatcggtgtatattattttacacatgcatcaatggatgtgttggcacaccaattaatgaatatgacaactc 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||    
T  3205821 tcataaaattgagtttaattaatatactttatcggtgtatattattttacatatgcat-aatggatgtgttggcacaccaattaatgaatatgacaactc 3205723  T
Q  210 gtgttttcttattcattaatttacgtggca-------ccagatcaaacttcaaagaagccaatagaactaaattagtgtgcagtaattaacaaatatcaa 302  Q
    |||||||||||||||||||||||| |||||        ||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||    
T  3205722 gtgttttcttattcattaatttacatggcaacgcatgtcagatcaaacttca---aagccaatagaactaaattagtgtgcagtaattaacaaatatcaa 3205626  T
Q  303 gtaatagacaattaagaatttacactttcttttataaaataggaacaaaagaaaatattcttgaaaagtaataataatc 381  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  3205625 gtaatagacaattaagaatttacactttcttttataaaataggaacaatagaaaatattcttgaaaagtaataataatc 3205547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 230
Target Start/End: Original strand, 2428031 - 2428112
Alignment:
Q  150 attattttacacatgcatcaatggatgtgttggcacaccaattaatgaatatgacaact-cgtgttttcttattcattaatt 230  Q
    |||||||||||||||||||    ||||||||  |||| ||||||||||||||||||| |  |||||||| ||||||||||||    
T  2428031 attattttacacatgcatcttatgatgtgttatcacatcaattaatgaatatgacaattaagtgttttcatattcattaatt 2428112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 152 - 230
Target Start/End: Original strand, 24766018 - 24766096
Alignment:
Q  152 tattttacacatgcatcaatggatgtgttggcacaccaattaatgaatatgacaactc--gtgttttcttattcattaatt 230  Q
    |||||||||||| ||| |||| |||||||| |||| |||||||||||||||||||| |  |||||||| |||| |||||||    
T  24766018 tattttacacatacat-aatg-atgtgttgccacatcaattaatgaatatgacaacgcatgtgttttcatatttattaatt 24766096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 92; Significance: 4e-44; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 92; E-Value: 4e-44
Query Start/End: Original strand, 595 - 898
Target Start/End: Complemental strand, 44654781 - 44654478
Alignment:
Q  595 acagcaccaggaccatgtggaatgaacacagatgaagattttgaggatgcaccgatttccttcatggtgtcaaagtattgagtcaccaacaccatgtcca 694  Q
    ||||||||||| |||||||||||||||||||  ||||| || ||||  ||||| ||||| ||||| ||||||||||||||||| || |  ||||| ||||    
T  44654781 acagcaccaggtccatgtggaatgaacacagcagaagacttggaggcagcaccaatttctttcatagtgtcaaagtattgagtgacaaggaccatatcca 44654682  T
Q  695 tgacatctttagcagttgttccgggaacattctctgagaatgctagcacactgtctctcagtccgtcaacaattgcttgacgttggcgagctataccgag 794  Q
    |||||||||| ||||| || || || |||||  |||| ||| | | ||||||||||||||  || || ||||| |||||||| |||||||| ||||| |     
T  44654681 tgacatcttttgcagtcgtccctggtacattaactgaaaatccaatcacactgtctctcaaaccatccacaatcgcttgacgctggcgagcaatacccaa 44654582  T
Q  795 tcctgacagatatttggactcagcttctccttcagctttcttgatctgcaatatcttttctgcttcagccttctcgttcgcagccaacctcattcttgca 894  Q
     || || |||||||| |||||||| || || || |||  ||| || ||||| || || ||||||||||||||||| || || ||||||||||||||||||    
T  44654581 cccagagagatatttagactcagcctcaccctcggctcgcttaatttgcaagattttctctgcttcagccttctctttagctgccaacctcattcttgca 44654482  T
Q  895 gctg 898  Q
    ||||    
T  44654481 gctg 44654478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 595 - 897
Target Start/End: Complemental strand, 44693312 - 44693010
Alignment:
Q  595 acagcaccaggaccatgtggaatgaacacagatgaagattttgaggatgcaccgatttccttcatggtgtcaaagtattgagtcaccaacaccatgtcca 694  Q
    ||||||||||| |||||||||||||||||||  ||||| || ||||  ||||| ||||| ||||| ||||||||||||||||| || |  ||||| ||||    
T  44693312 acagcaccaggtccatgtggaatgaacacagcagaagacttggaggcagcaccaatttctttcatagtgtcaaagtattgagtgacaaggaccatatcca 44693213  T
Q  695 tgacatctttagcagttgttccgggaacattctctgagaatgctagcacactgtctctcagtccgtcaacaattgcttgacgttggcgagctataccgag 794  Q
    |||||||||| ||| |||  || || ||||||||||| ||| | | ||||||||||||||  || || ||||| ||||||||||| ||||| ||||| |     
T  44693212 tgacatcttttgcacttggccctggtacattctctgaaaatccaatcacactgtctctcaaaccatctacaatggcttgacgttgacgagcaatacccat 44693113  T
Q  795 tcctgacagatatttggactcagcttctccttcagctttcttgatctgcaatatcttttctgcttcagccttctcgttcgcagccaacctcattcttgca 894  Q
     || || |||||||| |||||||| || || || |||  ||| || ||||| || || ||||||||||||||||| || || || | |||||||||||||    
T  44693112 cccagagagatatttagactcagcctcaccctcggctcgctttatttgcaagattttctctgcttcagccttctcattagctgcgatcctcattcttgca 44693013  T
Q  895 gct 897  Q
    |||    
T  44693012 gct 44693010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 595 - 898
Target Start/End: Complemental strand, 44683580 - 44683277
Alignment:
Q  595 acagcaccaggaccatgtggaatgaacacagatgaagattttgaggatgcaccgatttccttcatggtgtcaaagtattgagtcaccaacaccatgtcca 694  Q
    ||||| ||||| || ||||||||||||||||  ||||| || ||||  || || ||||| ||||| ||||||||||||||||| || |  ||||| ||||    
T  44683580 acagcgccaggtccgtgtggaatgaacacagcagaagacttggaggcagccccaatttctttcatagtgtcaaagtattgagtgacaaggaccatatcca 44683481  T
Q  695 tgacatctttagcagttgttccgggaacattctctgagaatgctagcacactgtctctcagtccgtcaacaattgcttgacgttggcgagctataccgag 794  Q
    |||||||||| ||||| || || || |||||  |||| ||| | | ||||||||||||||  || || ||||| |||||||| |||||||| ||||| |     
T  44683480 tgacatcttttgcagtcgtccctggtacattaactgaaaatccaatcacactgtctctcaaaccatccacaatggcttgacgctggcgagcaatacccaa 44683381  T
Q  795 tcctgacagatatttggactcagcttctccttcagctttcttgatctgcaatatcttttctgcttcagccttctcgttcgcagccaacctcattcttgca 894  Q
     || || |||||||| |||||||| || || || |||  ||| || ||||| || || ||||||||||||||||| || || ||||||||||||||||||    
T  44683380 cccagagagatatttagactcagcctcaccctcggctcgcttaatttgcaagattttctctgcttcagccttctctttagctgccaacctcattcttgca 44683281  T
Q  895 gctg 898  Q
    ||||    
T  44683280 gctg 44683277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 595 - 898
Target Start/End: Complemental strand, 44632915 - 44632612
Alignment:
Q  595 acagcaccaggaccatgtggaatgaacacagatgaagattttgaggatgcaccgatttccttcatggtgtcaaagtattgagtcaccaacaccatgtcca 694  Q
    ||||| ||||| |||||||||||||||||||  ||||| || ||||  || || ||||| ||||  ||||||||||||||||| || |  ||||| ||||    
T  44632915 acagcgccaggtccatgtggaatgaacacagcagaagacttggaggcagccccaatttctttcaaagtgtcaaagtattgagtgacaaggaccatatcca 44632816  T
Q  695 tgacatctttagcagttgttccgggaacattctctgagaatgctagcacactgtctctcagtccgtcaacaattgcttgacgttggcgagctataccgag 794  Q
    |||||||||| ||| |||| || || |||||  | |||||| | | ||||||||||||||  || || ||||| ||||||||||||||||| ||||| |     
T  44632815 tgacatcttttgcacttgtccctggtacattaaccgagaatccaatcacactgtctctcaaaccatccacaatggcttgacgttggcgagcaatacccat 44632716  T
Q  795 tcctgacagatatttggactcagcttctccttcagctttcttgatctgcaatatcttttctgcttcagccttctcgttcgcagccaacctcattcttgca 894  Q
     || || ||||||||||||||||| || || || |||  ||| || ||||| ||||| ||||| || || ||||| || || || |||||||||||||||    
T  44632715 cccagagagatatttggactcagcctcaccctcggctcgctttatttgcaagatcttctctgcctccgctttctccttagctgctaacctcattcttgca 44632616  T
Q  895 gctg 898  Q
    ||||    
T  44632615 gctg 44632612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 595 - 791
Target Start/End: Complemental strand, 44625626 - 44625430
Alignment:
Q  595 acagcaccaggaccatgtggaatgaacacagatgaagattttgaggatgcaccgatttccttcatggtgtcaaagtattgagtcaccaacaccatgtcca 694  Q
    ||||||||||| |||||||||||||||||||  ||||| || ||||  ||||| ||||| ||||| ||||||||||||||||| || |  ||||| ||||    
T  44625626 acagcaccaggtccatgtggaatgaacacagcagaagacttggaggcagcaccaatttctttcatagtgtcaaagtattgagtgacaaggaccatatcca 44625527  T
Q  695 tgacatctttagcagttgttccgggaacattctctgagaatgctagcacactgtctctcagtccgtcaacaattgcttgacgttggcgagctatacc 791  Q
    |||||||||| ||||| || || || |||||  |||| ||| | | ||||||||||||||  || || ||||| |||||||| |||||||| |||||    
T  44625526 tgacatcttttgcagtcgtccctggtacattaactgaaaatccaatcacactgtctctcaaaccatccacaatcgcttgacgctggcgagcaatacc 44625430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 595 - 791
Target Start/End: Original strand, 44635927 - 44636123
Alignment:
Q  595 acagcaccaggaccatgtggaatgaacacagatgaagattttgaggatgcaccgatttccttcatggtgtcaaagtattgagtcaccaacaccatgtcca 694  Q
    ||||||||||| || ||||||||||||||||  |||||||| ||||  ||||| ||||| ||||| ||||||||||||||||| || |  ||||  ||||    
T  44635927 acagcaccaggtccgtgtggaatgaacacagcagaagatttggaggcagcaccaatttctttcatagtgtcaaagtattgagtgacaaggaccaaatcca 44636026  T
Q  695 tgacatctttagcagttgttccgggaacattctctgagaatgctagcacactgtctctcagtccgtcaacaattgcttgacgttggcgagctatacc 791  Q
    |||||||||||||| |||| || || |||||  |||| ||| | | ||||||||||||||  || || ||||| ||||||||||| ||||| |||||    
T  44636027 tgacatctttagcacttgtccctggtacattaactgaaaatccaatcacactgtctctcaaaccatccacaatggcttgacgttgacgagcaatacc 44636123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 230
Target Start/End: Original strand, 31052978 - 31053058
Alignment:
Q  152 tattttacacatgcatcaatggatgtgttggcacaccaattaatgaatatgacaactc--gtgttttcttattcattaatt 230  Q
    ||||||||||||||||| |  | |||||||  ||| | ||||||||||||||||||||  |||||||| ||||||||||||    
T  31052978 tattttacacatgcatccaatgttgtgttgctacatcgattaatgaatatgacaactcgtgtgttttcatattcattaatt 31053058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 236
Target Start/End: Original strand, 45994735 - 45994822
Alignment:
Q  150 attattttacacatgcatcaatggatgtgttggcacaccaattaatgaatatgacaactcgtgtt-ttcttattcattaatttacgtg 236  Q
    ||||||||| |||||||||||  ||||||||| |||   ||||||||||| ||| |||||||||| |||  ||||||||||| |||||    
T  45994735 attattttatacatgcatcaaacgatgtgttgtcacgtgaattaatgaatgtgataactcgtgttcttcaaattcattaattcacgtg 45994822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 3e-20; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 634 - 897
Target Start/End: Original strand, 25102988 - 25103251
Alignment:
Q  634 tttgaggatgcaccgatttccttcatggtgtcaaagtattgagtcaccaacaccatgtccatgacatctttagcagttgttccgggaacattctctgaga 733  Q
    ||||||||||| || || |||||||  |||||||||||||| ||||| |  ||||||||||||||||| || |  | ||| ||||| ||||||||||  |    
T  25102988 tttgaggatgcgccaatctccttcaatgtgtcaaagtattgggtcacaagaaccatgtccatgacatcctttgatgatgtcccggggacattctctgcaa 25103087  T
Q  734 atgctagcacactgtctctcagtccgtcaacaattgcttgacgttggcgagctataccgagtcctgacagatatttggactcagcttctccttcagcttt 833  Q
    ||||||| |||||||| || || |||||||| || |||||||| || |||||||| || || ||||  ||||| || || || || ||||| || ||  |    
T  25103088 atgctagaacactgtccctaagcccgtcaactatggcttgacgctgacgagctattccaagccctgctagatactttgattctgcatctccctctgccct 25103187  T
Q  834 cttgatctgcaatatcttttctgcttcagccttctcgttcgcagccaacctcattcttgcagct 897  Q
     || || ||||  ||||| ||||||||||| |||||  | ||||||| ||| | ||||||||||    
T  25103188 ttttatgtgcagaatcttctctgcttcagctttctcacttgcagccatcctaaatcttgcagct 25103251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 150 - 235
Target Start/End: Complemental strand, 10172526 - 10172439
Alignment:
Q  150 attattttacacatgcatcaatggatgtgttggcacaccaattaatgaatatgacaactc--gtgttttcttattcattaatttacgt 235  Q
    |||||||||||||||||||||  |||| |||| |||  |||||| |||||||||||||||   |||||||  ||||||||||| ||||    
T  10172526 attattttacacatgcatcaaatgatgcgttgtcacgtcaattagtgaatatgacaactcatatgttttcacattcattaattgacgt 10172439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 236
Target Start/End: Complemental strand, 8173240 - 8173164
Alignment:
Q  160 acatgcatcaatggatgtgttggcacaccaattaatgaatatgacaactcgtgttttcttattcattaatttacgtg 236  Q
    ||||||||| |  ||||||||| || | |||||||||||||| ||||||||||||||  |||||||||||| |||||    
T  8173240 acatgcatccagtgatgtgttgccatatcaattaatgaatataacaactcgtgtttttatattcattaattaacgtg 8173164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 150 - 212
Target Start/End: Complemental strand, 14717393 - 14717331
Alignment:
Q  150 attattttacacatgcatcaatggatgtgttggcacaccaattaatgaatatgacaactcgtg 212  Q
    ||||||||||||||||||| |  ||||||||| |||| |||||||||||||||| ||| ||||    
T  14717393 attattttacacatgcatctaatgatgtgttgtcacatcaattaatgaatatgaaaacacgtg 14717331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 236
Target Start/End: Complemental strand, 11603383 - 11603273
Alignment:
Q  123 tttaattaatatactttatcggtgtata-ttattttacacatgcatcaatggatgtgttggcacaccaattaatgaatatgacaactcgtgttttcttat 221  Q
    ||||||||||| ||||||||  | |||| ||||||||  |||||||| |  ||||||||| ||||||||||| ||||||||| |    |||||||| |||    
T  11603383 tttaattaataaactttatcaatctataattattttaatcatgcatctaatgatgtgttgtcacaccaattagtgaatatgaaa----gtgttttcatat 11603288  T
Q  222 tcattaatttacgtg 236  Q
    ||||||||| |||||    
T  11603287 tcattaattgacgtg 11603273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 236
Target Start/End: Complemental strand, 1465897 - 1465775
Alignment:
Q  117 attgagtttaattaatatactttatcggtgtata-ttattttacacatgcatcaatggatgtgttggcacaccaattaatgaatatgacaactc--gtgt 213  Q
    |||| ||||||||| ||||||  ||| ||||| | |||||||||||||||||| |  ||||||||  |||| || || || |||||||||||||  ||||    
T  1465897 attgggtttaattagtatactcgatcagtgtacaattattttacacatgcatccaatgatgtgtttccacatcatttgatcaatatgacaactcgtgtgt 1465798  T
Q  214 tttcttattcattaatttacgtg 236  Q
    |||| |||| ||||||| |||||    
T  1465797 tttcatatttattaattgacgtg 1465775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 230
Target Start/End: Original strand, 18358792 - 18358874
Alignment:
Q  150 attattttacacatgcatcaatggatgtgttggcacaccaattaatgaatatgacaactc--gtgttttcttattcattaatt 230  Q
    |||||||| ||||||||||||  ||||||||| ||   ||||||||||||||||||| ||  |||||||| | ||||||||||    
T  18358792 attattttgcacatgcatcaaatgatgtgttgtcatgtcaattaatgaatatgacaagtcatgtgttttcatgttcattaatt 18358874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University