View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13382_low_13 (Length: 549)

Name: NF13382_low_13
Description: NF13382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13382_low_13
NF13382_low_13
[»] chr4 (4 HSPs)
chr4 (148-531)||(19316995-19317378)
chr4 (1-148)||(19315299-19315446)
chr4 (148-533)||(43990365-43990750)
chr4 (72-137)||(16006889-16006954)
[»] chr5 (5 HSPs)
chr5 (148-383)||(34904345-34904580)
chr5 (273-533)||(38945180-38945441)
chr5 (312-412)||(12716075-12716175)
chr5 (312-412)||(12777306-12777406)
chr5 (319-433)||(31524-31638)
[»] chr7 (4 HSPs)
chr7 (264-420)||(23819262-23819418)
chr7 (482-526)||(24810076-24810120)
chr7 (264-356)||(24809986-24810078)
chr7 (294-385)||(21117161-21117252)
[»] chr1 (3 HSPs)
chr1 (148-531)||(20638258-20638642)
chr1 (148-222)||(11352705-11352779)
chr1 (472-519)||(51085112-51085159)
[»] chr6 (2 HSPs)
chr6 (148-535)||(941314-941694)
chr6 (294-434)||(4511190-4511330)
[»] chr8 (1 HSPs)
chr8 (148-533)||(18479850-18480236)
[»] chr2 (1 HSPs)
chr2 (326-517)||(218541-218733)


Alignment Details
Target: chr4 (Bit Score: 312; Significance: 1e-175; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 312; E-Value: 1e-175
Query Start/End: Original strand, 148 - 531
Target Start/End: Original strand, 19316995 - 19317378
Alignment:
Q  148 tatgatcgaacaaattagaaattacagtagtattccaaacctttgttgatggctcggtgatgtcctgaactttgacatgtgataggggcacatacatagg 247  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19316995 tatgatcgaacaaattagaaattacagtagtattccaaacctttgttgatggctcggtgatgtcctgaactttgacatgtgataggggcacatacatagg 19317094  T
Q  248 tctgtccattgtaagagaacatccctctttaagccatgatgtacttaacaaaggaatagtagcacctgatccaatcctccatctagcaccttgtttaacc 347  Q
      |||||||||||||||||||  | ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19317095 gttgtccattgtaagagaacactcgtctttaagccatggtgtacttaacaaaggaatagtagcacctgatccaatcctccatctagcaccttgtttaacc 19317194  T
Q  348 accattttcgcattgaaaatacttcgcaacacataactggggttagctccaagtctagaactcaggaaatcaccatgaggaaaataggcgccttggacaa 447  Q
    |||||||| ||| |||||||||||||||||||| |||   |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  19317195 accattttagcactgaaaatacttcgcaacacaaaaccaaggttagctccaagtctagaactcaagaaatcaccatgaggaaaataggcgccttggacaa 19317294  T
Q  448 ccacgtcacaagacaagtagtatttgtttgaaacttccatccttgttttccaagcatcaccacattaaaagatgtgaggtcctt 531  Q
    |||| ||||||||| | |||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  19317295 ccacatcacaagactaatagtatctgtttgaaacttccatccttgttttccaagcatcaccaaattaaaagatgtgaggtcctt 19317378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 19315299 - 19315446
Alignment:
Q  1 aacattttagaggcactgctctaacaaatttgagcccatcagaattttggcaatctaattttttgaggttaaaattggcatatgaaataagcaagtagat 100  Q
    |||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||    
T  19315299 aacattttagagacactgctctaacaaatttgagtccatcagaattttggcaatctaattttttgaggttaaaattggcatttgaaataagcaagttgat 19315398  T
Q  101 gttgttttgtcaataatttgtctctatttatagagaaatgaaacaact 148  Q
    ||||||||||||||||||||||||| |||||||||||| |||||||||    
T  19315399 gttgttttgtcaataatttgtctctttttatagagaaaagaaacaact 19315446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 148 - 533
Target Start/End: Original strand, 43990365 - 43990750
Alignment:
Q  148 tatgatcgaacaaattagaaattacagtagtattccaaacctttgttgatggctcggtgatgtcctgaactttgacatgtgataggggcacatacatagg 247  Q
    ||||||| |||||||||||||||| ||| | ||||||||||||||| ||||| ||| ||||||| |||||||||||||| |  || | | |||| | |||    
T  43990365 tatgatcaaacaaattagaaattaaagttgcattccaaacctttgtcgatggttcgatgatgtcttgaactttgacatgagcaagtgacgcataaagagg 43990464  T
Q  248 tctgtccattgtaagagaacatccctctttaagccatgatgtacttaacaaaggaatagtagcacctgatccaatcctccatctagcaccttgtttaacc 347  Q
     || |   |||  || ||||| || ||||||||||| || | ||  |||||||||||| |||||||  | ||||||||||||||| |||| |||| ||||    
T  43990465 gctttgtgttgagagggaacaaccatctttaagccacgaagcaccaaacaaaggaatactagcaccataaccaatcctccatctaacacc-tgttcaacc 43990563  T
Q  348 accattttcgcattgaaaatacttcgcaacacataactggggttagctccaagtctagaactcaggaaatcaccatgaggaaaata-ggcgccttggaca 446  Q
    || ||||| ||  | || ||||||||| | ||||| ||||| ||||  ||||| ||||||||||  || ||||  || ||||||||  | || ||| | |    
T  43990564 acaattttagcgctaaatatacttcgccatacatagctgggattagggccaagcctagaactcaaaaagtcacattgtggaaaatatcgtgctttgaata 43990663  T
Q  447 accacgtcacaagacaagtagtatttgtttgaaacttccatccttgttttccaagcatcaccacattaaaagatgtgaggtccttga 533  Q
    | |  | |||||||| |||  |||   ||||||| |||||||| ||||| ||||||||| |||||| ||||||||||||||||||||    
T  43990664 aacgagacacaagactagtgttatcaatttgaaatttccatccctgtttaccaagcatcgccacatgaaaagatgtgaggtccttga 43990750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 72 - 137
Target Start/End: Original strand, 16006889 - 16006954
Alignment:
Q  72 aaattggcatatgaaataagcaagtagatgttgttttgtcaataatttgtctctatttatagagaa 137  Q
    ||||||||||||||||||||||| |  |||||||||||  |||||||||||||| |||||||||||    
T  16006889 aaattggcatatgaaataagcaaattcatgttgttttgctaataatttgtctctttttatagagaa 16006954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 132; Significance: 3e-68; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 148 - 383
Target Start/End: Complemental strand, 34904580 - 34904345
Alignment:
Q  148 tatgatcgaacaaattagaaattacagtagtattccaaacctttgttgatggctcggtgatgtcctgaactttgacatgtgataggggcacatacatagg 247  Q
    |||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||| |||||| | | ||||||||||| ||||||||  ||||||||||    
T  34904580 tatgattgaacatattagaaattagagtagtattccaaacctttgttgatggctcgatgatgttcggcactttgacatgggataggggtgcatacatagg 34904481  T
Q  248 tctgtccattgtaagagaacatccctctttaagccatgatgtacttaacaaaggaatagtagcacctgatccaatcctccatctagcaccttgtttaacc 347  Q
      |||||||||||||||||| ||| ||||||||||||| || |  |||||||||||||||| ||||||||||||| |||||||||||||| |||||||||    
T  34904480 attgtccattgtaagagaacgtccgtctttaagccatggtgcatctaacaaaggaatagtatcacctgatccaattctccatctagcaccctgtttaacc 34904381  T
Q  348 accattttcgcattgaaaatacttcgcaacacataa 383  Q
    | |||||| ||| |||||||||||||| | ||||||    
T  34904380 atcattttagcactgaaaatacttcgccatacataa 34904345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 273 - 533
Target Start/End: Complemental strand, 38945441 - 38945180
Alignment:
Q  273 tctttaagccatgatgtacttaacaaaggaatagtagcacctgatccaatcctccatctagcaccttgtttaaccaccattttcgcattgaaaatacttc 372  Q
    |||||||||||||  | ||  |||||||||||| ||||||| || ||||| |||||||||||||||||||||| ||||||||| ||| |||||||||| |    
T  38945441 tctttaagccatggagcaccgaacaaaggaatactagcaccagaaccaattctccatctagcaccttgtttaatcaccattttagcactgaaaatactcc 38945342  T
Q  373 gcaacacataactggggttagctccaagtctagaactcaggaaatcaccatgaggaaaata-ggcgccttggacaaccacgtcacaagacaagtagtatt 471  Q
    || | |||||| |||| ||||||||||| ||||||||||  |||||||   ||||||||||  | |||||  | || |  | || ||||| |||| |||     
T  38945341 gccaaacataattgggattagctccaagcctagaactcaaaaaatcacacggaggaaaatattgtgccttaaataaacgagacaaaagactagtattatc 38945242  T
Q  472 tgtttgaaacttccatccttgttttccaagcatcaccacattaaaagatgtgaggtccttga 533  Q
       |||||| |||||||| ||||| ||||||||| |||||||||||||||||||||||||||    
T  38945241 aacttgaaatttccatccctgtttaccaagcatcgccacattaaaagatgtgaggtccttga 38945180  T

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Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 312 - 412
Target Start/End: Original strand, 12716075 - 12716175
Alignment:
Q  312 cctgatccaatcctccatctagcaccttgtttaaccaccattttcgcattgaaaatacttcgcaacacataactggggttagctccaagtctagaactca 411  Q
    ||||| ||||||| |||||| ||||| ||||| ||||||||||| ||| | ||||||||| ||   ||||||||| | |||| |||||||||||||||||    
T  12716075 cctgacccaatccaccatcttgcaccctgtttcaccaccattttagcactaaaaatactttgcccgacataactgagattagttccaagtctagaactca 12716174  T
Q  412 g 412  Q
    |    
T  12716175 g 12716175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 312 - 412
Target Start/End: Original strand, 12777306 - 12777406
Alignment:
Q  312 cctgatccaatcctccatctagcaccttgtttaaccaccattttcgcattgaaaatacttcgcaacacataactggggttagctccaagtctagaactca 411  Q
    ||||| ||||||| |||||| ||||| ||||| ||||||||||| ||| | ||||||||| ||   ||||||||| | |||| |||||||||||||||||    
T  12777306 cctgacccaatccaccatcttgcaccctgtttcaccaccattttagcactaaaaatactttgcccgacataactgagattagttccaagtctagaactca 12777405  T
Q  412 g 412  Q
    |    
T  12777406 g 12777406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 319 - 433
Target Start/End: Complemental strand, 31638 - 31524
Alignment:
Q  319 caatcctccatctagcaccttgtttaaccaccattttcgcattgaaaatacttcgcaacacataactggggttagctccaagtctagaactcaggaaatc 418  Q
    ||||||||||||  || || ||||| ||||||||||| ||| | |||||| ||| |   |||||| |||| ||| |||||| |||||||||| |||| ||    
T  31638 caatcctccatcgtgccccctgtttcaccaccattttagcactaaaaataattcacctgacataattgggattaactccaaatctagaactctggaagtc 31539  T
Q  419 accatgaggaaaata 433  Q
    ||||| || ||||||    
T  31538 accattagaaaaata 31524  T

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Target: chr7 (Bit Score: 69; Significance: 1e-30; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 264 - 420
Target Start/End: Complemental strand, 23819418 - 23819262
Alignment:
Q  264 gaacatccctctttaagccatgatgtacttaacaaaggaatagtagcacctgatccaatcctccatctagcaccttgtttaaccaccattttcgcattga 363  Q
    |||||||| |||||||||||||| | ||  |||||||||| | ||||||| || |||||||||||||||||||| | ||||||||| ||||| ||| |||    
T  23819418 gaacatccatctttaagccatgaagcaccaaacaaaggaacactagcaccggaaccaatcctccatctagcaccctatttaaccacaattttagcactga 23819319  T
Q  364 aaatacttcgcaacacataactggggttagctccaagtctagaactcaggaaatcac 420  Q
    | ||||||||| | ||||| ||||| ||||||||||| ||||||||||  |||||||    
T  23819318 atatacttcgccatacatagctgggattagctccaagcctagaactcaaaaaatcac 23819262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 482 - 526
Target Start/End: Original strand, 24810076 - 24810120
Alignment:
Q  482 ttccatccttgttttccaagcatcaccacattaaaagatgtgagg 526  Q
    |||||||| ||||||||||||||| ||||||||||||||||||||    
T  24810076 ttccatccatgttttccaagcatcgccacattaaaagatgtgagg 24810120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 264 - 356
Target Start/End: Original strand, 24809986 - 24810078
Alignment:
Q  264 gaacatccctctttaagccatgatgtacttaacaaaggaatagtagcacctgatccaatcctccatctagcaccttgtttaaccaccattttc 356  Q
    ||||| || |||||||||||||  | ||  |||||||||||| |||||||  | ||||| || |||||||||| |||||||||||||| ||||    
T  24809986 gaacaaccatctttaagccatggagcaccgaacaaaggaatactagcaccaaaaccaattcttcatctagcactttgtttaaccaccaatttc 24810078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 294 - 385
Target Start/End: Complemental strand, 21117252 - 21117161
Alignment:
Q  294 aacaaaggaatagtagcacctgatccaatcctccatctagcaccttgtttaaccaccattttcgcattgaaaatacttcgcaacacataact 385  Q
    |||||||||||| ||||||  | |||||| ||||||||||| || |||| ||| |||||||| ||  | |||||||| ||| ||||||||||    
T  21117252 aacaaaggaatattagcactcgttccaattctccatctagcgccctgttgaacaaccattttagcgctaaaaatactgcgccacacataact 21117161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 1e-30; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 148 - 531
Target Start/End: Complemental strand, 20638642 - 20638258
Alignment:
Q  148 tatgatcgaacaaattagaaattacagtagtattccaaacctttgttgatggctcggtgatgtcctgaactttgacatgtgataggggcacatacatagg 247  Q
    ||||||| |||||||||||||||| ||||| || |||||||||||| ||||| ||| |||| || |||||||||||||| |  || ||| |||| | |||    
T  20638642 tatgatcaaacaaattagaaattaaagtagcatgccaaacctttgtcgatggttcgatgatatcttgaactttgacatgagcaagtggcgcataaagagg 20638543  T
Q  248 tctgtccattgtaagagaacatccctctttaagccatgatgtacttaacaaaggaatagtagcacctgatccaatcctccatctagcaccttgtttaacc 347  Q
     || |  |||| ||| ||||| ||||| |||||||||   | ||  |||||||||||| ||||||| || ||||||||||| ||| |||| |||||||||    
T  20638542 gctttgtattgaaagggaacaaccctcattaagccatagagcaccgaacaaaggaatactagcaccagaaccaatcctccaactaacaccctgtttaacc 20638443  T
Q  348 accattttcgcattgaaaatacttcgcaacacataactggggttagctccaagtctagaactcaggaaatcaccatgaggaaaat-aggcgccttggaca 446  Q
    || ||||| ||  |||| |||||| || | |||||  |||| |||| |||||| |||||||||   ||| |||  || || |||| | | || ||| | |    
T  20638442 acaattttagcgctgaatatactttgccatacatagttgggattaggtccaagcctagaactcgaaaaaacacattgtggtaaataacgtgctttgaata 20638343  T
Q  447 accacgtcacaagacaagtagtatttgtttgaaacttccatccttgttttccaagcatcaccacattaaaagatgtgaggtcctt 531  Q
    |    | |||||||| |||  |||   ||||||| |||||||| ||||| ||||||||| |||||||||||||||||||||||||    
T  20638342 aatgagacacaagactagtgttatcaatttgaaatttccatccctgtttaccaagcatcgccacattaaaagatgtgaggtcctt 20638258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 148 - 222
Target Start/End: Original strand, 11352705 - 11352779
Alignment:
Q  148 tatgatcgaacaaattagaaattacagtagtattccaaacctttgttgatggctcggtgatgtcctgaactttga 222  Q
    ||||||| |||||||||||||||| ||||| | | ||||||||||| ||||| ||| ||||||| ||||||||||    
T  11352705 tatgatcaaacaaattagaaattaaagtagcacttcaaacctttgtcgatggttcgatgatgtcttgaactttga 11352779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 472 - 519
Target Start/End: Original strand, 51085112 - 51085159
Alignment:
Q  472 tgtttgaaacttccatccttgttttccaagcatcaccacattaaaaga 519  Q
    ||||||||||||||| || ||||| ||||||||| |||||||||||||    
T  51085112 tgtttgaaacttccacccctgtttaccaagcatcgccacattaaaaga 51085159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 148 - 535
Target Start/End: Complemental strand, 941694 - 941314
Alignment:
Q  148 tatgatcgaacaaattagaaattacagtagtattccaaacctttgttgatggctcggtgatgtcctgaactttgacatgtgataggggcacatacatagg 247  Q
    ||||||| |||||||||||||||| ||||| ||||||||||||||| |||||        |||||||||| || ||||| |  || ||| |||| | |||    
T  941694 tatgatcaaacaaattagaaattaaagtagcattccaaacctttgtcgatgg--------tgtcctgaacattaacatgagcaagtggcgcataaagagg 941603  T
Q  248 tctgtccattgtaagagaacatccctctttaagccatgatgtacttaacaaaggaatagtagcacctgatccaatcctccatctagcaccttgtttaacc 347  Q
     || |   |||  || ||||| || ||||||||||| |  | ||  |||||||||||| ||||||| || ||||||||||||||| |||| |||||||||    
T  941602 gctttgtgttgagagggaacaaccgtctttaagccacggagcaccgaacaaaggaatactagcaccagaaccaatcctccatctaacaccctgtttaacc 941503  T
Q  348 accattttcgcattgaaaatacttcgcaacacataactggggttagctccaagtctagaactcaggaaatcaccatgaggaaaata-ggcgccttggaca 446  Q
    |  ||||| || ||||| ||||||||| | ||||| ||||| |||| |||| | ||||||||||  |||||||  || ||||||||  | || ||| | |    
T  941502 ataattttagcgttgaatatacttcgccatacatagctgggattaggtccatgcctagaactcaaaaaatcacactgtggaaaatatcgtgctttgaata 941403  T
Q  447 accacgtcacaagacaagtagtatttgtttgaaacttccatccttgttttccaagcatcaccacattaaaagatgtgaggtccttgatg 535  Q
    |    | |||||||| |||  |||   ||||||| ||  ||| |||||| ||||||||| |||||||||||||||||||||||||||||    
T  941402 aaggagacacaagactagtgttatcaatttgaaatttaaatctttgtttaccaagcatcgccacattaaaagatgtgaggtccttgatg 941314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 294 - 434
Target Start/End: Complemental strand, 4511330 - 4511190
Alignment:
Q  294 aacaaaggaatagtagcacctgatccaatcctccatctagcaccttgtttaaccaccattttcgcattgaaaatacttcgcaacacataactggggttag 393  Q
    |||||||||||| ||||||| | ||||||||||||||||||||| ||||  ||  | ||||| ||| | |||||||| ||| |||||||||| || ||||    
T  4511330 aacaaaggaatattagcacccgttccaatcctccatctagcaccatgttggacatctattttagcactaaaaatactacgccacacataactaggattag 4511231  T
Q  394 ctccaagtctagaactcaggaaatcaccatgaggaaaatag 434  Q
    | |||| || | || |||| ||||||  |||||||| ||||    
T  4511230 caccaattcgacaaatcagaaaatcagtatgaggaatatag 4511190  T

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Target: chr8 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 148 - 533
Target Start/End: Complemental strand, 18480236 - 18479850
Alignment:
Q  148 tatgatcgaacaaattagaaattacagtagtattccaaacctttgttgatggctcggtgatgtcctgaactttgacatgtgataggggcacatacatagg 247  Q
    ||||||| |||||||||||||||| ||||| |||| |||||||||| ||||| ||| ||||||| |||||||||||||| |  || | | |||| |  ||    
T  18480236 tatgatcaaacaaattagaaattaaagtagcattcgaaacctttgtcgatggttcgatgatgtcttgaactttgacatgagcaagtgacgcataaagcgg 18480137  T
Q  248 tctgtccattgtaagagaacatccctctttaagccatgatgtacttaacaaaggaatagtagcacctgatccaatcctccatctagcaccttgtttaacc 347  Q
     |  |   ||   || |||||||| ||||||||||| || | ||   ||||||||||| ||||||  || ||||||||||||||| |||| ||||||| |    
T  18480136 gcattgtgttaagagggaacatccgtctttaagccacgaagcaccacacaaaggaatactagcactagaaccaatcctccatctaacaccctgtttaaac 18480037  T
Q  348 accattttcgcattgaaaatacttcgcaacacataactggggttagctccaagtctagaactcaggaaatcaccatgaggaaaata-ggcgccttggaca 446  Q
    || ||||| ||  | || ||||||||| | ||||| ||| | ||||  ||||| ||||||||||  || ||||  || ||||||||  | || ||| | |    
T  18480036 acaattttagcgctaaatatacttcgccatacatagctgcgattagggccaagcctagaactcaaaaagtcacattgtggaaaatatcgtgctttgaata 18479937  T
Q  447 accacgtcacaagacaagtagtatttgtttgaaacttccatccttgttttccaagcatcaccacattaaaagatgtgaggtccttga 533  Q
    | |  | |||||||| |||  |||   ||| ||| || ||||| ||||| ||||||||| |||||||||||||||||||||||||||    
T  18479936 aacgagacacaagactagtgttatcaatttaaaattttcatccctgtttaccaagcatcgccacattaaaagatgtgaggtccttga 18479850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 326 - 517
Target Start/End: Complemental strand, 218733 - 218541
Alignment:
Q  326 ccatctagcaccttgtttaaccaccattttcgcattgaaaatacttcgcaacacataactggggttagctccaagtctagaactcaggaaatcaccatga 425  Q
    |||| ||||||||||||| ||||||||||| ||  | || ||||||| | |||||||||| ||||||||  | |||| ||||| | |||||   | || |    
T  218733 ccatatagcaccttgtttcaccaccattttagctctaaagatacttcaccacacataactagggttagcaacgagtcaagaaccctggaaactgctatta 218634  T
Q  426 ggaaaatag-gcgccttggacaaccacgtcacaagacaagtagtatttgtttgaaacttccatccttgttttccaagcatcaccacattaaaa 517  Q
    | ||||||  |||||||| |||  |  |||||||||| ||| ||||  |||||||||||||| || ||||||||||||||  |||||||||||    
T  218633 gaaaaataacgcgccttgaacagacgagtcacaagactagtggtatcagtttgaaacttccaaccctgttttccaagcattgccacattaaaa 218541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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