View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13382_low_16 (Length: 518)

Name: NF13382_low_16
Description: NF13382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13382_low_16
NF13382_low_16
[»] chr5 (29 HSPs)
chr5 (21-274)||(30058739-30058985)
chr5 (18-266)||(30481782-30482032)
chr5 (18-266)||(29870636-29870886)
chr5 (26-203)||(30678644-30678833)
chr5 (71-243)||(30714545-30714716)
chr5 (18-158)||(30434380-30434522)
chr5 (288-400)||(30058578-30058695)
chr5 (316-400)||(30340018-30340102)
chr5 (19-186)||(29851832-29851998)
chr5 (316-400)||(30748183-30748267)
chr5 (18-160)||(30748199-30748343)
chr5 (18-158)||(30243775-30243919)
chr5 (316-382)||(30243853-30243919)
chr5 (18-160)||(30339928-30340086)
chr5 (316-382)||(30434380-30434446)
chr5 (316-384)||(30481888-30481956)
chr5 (18-96)||(17419294-17419373)
chr5 (183-266)||(29851725-29851808)
chr5 (316-384)||(30058853-30058921)
chr5 (18-74)||(30398658-30398714)
chr5 (316-384)||(29870742-29870810)
chr5 (185-254)||(30678848-30678917)
chr5 (460-501)||(30679043-30679084)
chr5 (316-384)||(30714565-30714633)
chr5 (460-501)||(30058477-30058518)
chr5 (316-384)||(30678721-30678790)
chr5 (317-378)||(29851863-29851925)
chr5 (460-501)||(30714843-30714884)
chr5 (460-495)||(30434103-30434138)
[»] chr7 (2 HSPs)
chr7 (18-186)||(26705791-26705963)
chr7 (316-384)||(26705817-26705885)
[»] chr4 (3 HSPs)
chr4 (138-266)||(20298255-20298383)
chr4 (18-62)||(20298150-20298194)
chr4 (18-66)||(13615444-13615492)
[»] chr1 (1 HSPs)
chr1 (18-67)||(7097997-7098046)


Alignment Details
Target: chr5 (Bit Score: 183; Significance: 9e-99; HSPs: 29)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 183; E-Value: 9e-99
Query Start/End: Original strand, 21 - 274
Target Start/End: Complemental strand, 30058985 - 30058739
Alignment:
Q  21 gaacaggggaggattgggacaagatagctcatattccaaaaataaagtttgagttataagaagcagagacgtttaccctttatctgcctcaattaccatc 120  Q
    |||||||||||||||||||||||||| ||||||||||||||||| |||||      |||||||||||||||||||||||| |||||||||| | ||||||    
T  30058985 gaacaggggaggattgggacaagatatctcatattccaaaaatacagttt------taagaagcagagacgtttaccctt-atctgcctcattaaccatc 30058893  T
Q  121 gcaaaaaactattttactggtaggatctcaatttccccttcttatgtttggatttcaactgctcaaaaatctttatttttattctcgttgttgacttctt 220  Q
    ||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||    
T  30058892 gcaaaaatcaattttactggtaggatctcaatttccccttcttatgtttggatttcaactgctcaaaaatctttatttttattctcattgtcgacatctt 30058793  T
Q  221 tggaacccattccgcaggaagagatccagagtacatgaaagatattctacctaa 274  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  30058792 tggaacccattctgcaggaagagatccagagtacatgaaagatattctacctaa 30058739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 178; E-Value: 9e-96
Query Start/End: Original strand, 18 - 266
Target Start/End: Complemental strand, 30482032 - 30481782
Alignment:
Q  18 agggaacaggggaggattgggacaagatagctcatattccaaaaataaagttt---gagttataagaagcagagacgtttaccctttatctgcctcaatt 114  Q
    |||||||| |||||||||||||||||||||||||||||||||||||| |||||   |||   |||||||||||||||||||||||| ||||||| ||||     
T  30482032 agggaacatgggaggattgggacaagatagctcatattccaaaaatacagtttaccgaggattaagaagcagagacgtttaccctt-atctgccacaatc 30481934  T
Q  115 accatcgcaaaaaactattttactggtaggatctcaatttccccttcttatgtttggatttcaactgctcaaaaatctttatttttattctcgttgttga 214  Q
    | ||||||||||| | |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30481933 aacatcgcaaaaatcaattttactggtaagatctcaatttccccttcttatgtttggatttcaactgctcaaaaatctttatttttattctcgttgttga 30481834  T
Q  215 cttctttggaacccattccgcaggaagagatccagagtacatgaaagatatt 266  Q
    ||| |||||||||||||||||||||||||||||||| |||||||||||||||    
T  30481833 cttatttggaacccattccgcaggaagagatccagactacatgaaagatatt 30481782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 18 - 266
Target Start/End: Complemental strand, 29870886 - 29870636
Alignment:
Q  18 agggaacaggggaggattgggacaagatagctcatattccaaaaataaagttt---gagttataagaagcagagacgtttaccctttatctgcctcaatt 114  Q
    |||||||||||||||||||||||||||||||||||||||||| |||| |||||   |||   |||||||||||||||||||||||| ||||||| ||||     
T  29870886 agggaacaggggaggattgggacaagatagctcatattccaataatacagtttaccgaggattaagaagcagagacgtttaccctt-atctgccacaatc 29870788  T
Q  115 accatcgcaaaaaactattttactggtaggatctcaatttccccttcttatgtttggatttcaactgctcaaaaatctttatttttattctcgttgttga 214  Q
    | ||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||    
T  29870787 aacatcgcaaaaatcaattttacttgtaggatctcaatttccccttcttatgtttggatttcaactgctcaaaaatctttatttttattctcattgtcga 29870688  T
Q  215 cttctttggaacccattccgcaggaagagatccagagtacatgaaagatatt 266  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29870687 catctttggaacccattccgcaggaagagatccagagtacatgaaagatatt 29870636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 26 - 203
Target Start/End: Original strand, 30678644 - 30678833
Alignment:
Q  26 ggggaggattgggacaagatagctcatattccaaaaataaagtttgagtta------------taagaagcagagacgtttaccctttatctgcctcaat 113  Q
    ||||||||||||||||||||||||||||||||||||||| ||||| ||||             ||||||||||||||||||||||||||||||||| |||    
T  30678644 ggggaggattgggacaagatagctcatattccaaaaatacagtttaagtttgaatgggaggattaagaagcagagacgtttaccctttatctgccttaat 30678743  T
Q  114 taccatcgcaaaaaactattttactggtaggatctcaatttccccttcttatgtttggatttcaactgctcaaaaatctttatttttatt 203  Q
     |||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30678744 caccatcgcaaaaatatattttactggtaggatctcaatttccccttcttatgtttggatttcaactgctcaaaaatctttatttttatt 30678833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 71 - 243
Target Start/End: Original strand, 30714545 - 30714716
Alignment:
Q  71 gagttataagaagcagagacgtttaccctttatctgcctcaattaccatcgcaaaaaactattttactggtaggatctcaatttccccttcttatgtttg 170  Q
    |||||||||||||||||||||||||||||| |||||||||| |  ||||| |||||| | ||||||||||||||||||| |||| |||||||||||||||    
T  30714545 gagttataagaagcagagacgtttaccctt-atctgcctcattagccatcacaaaaatcaattttactggtaggatctctatttacccttcttatgtttg 30714643  T
Q  171 gatttcaactgctcaaaaatctttatttttattctcgttgttgacttctttggaacccattccgcaggaagag 243  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |||||    
T  30714644 catttcaactgctcaaaaatctttatttttattctcgttgttgacttctttggaacgcatcccgcagaaagag 30714716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 18 - 158
Target Start/End: Complemental strand, 30434522 - 30434380
Alignment:
Q  18 agggaacaggggaggattgggacaagatagctcatattccaaaaataaagtt---tgagttataagaagcagagacgtttaccctttatctgcctcaatt 114  Q
    |||||||||||||||||||||||||||||||||||||||||| |||| ||||   |||  | |||||||||||||||||||||||| ||||||||||||     
T  30434522 agggaacaggggaggattgggacaagatagctcatattccaagaatagagttgattgatgtttaagaagcagagacgtttaccctt-atctgcctcaatc 30434424  T
Q  115 accatcgcaaaaaactattttactggtaggatctcaatttcccc 158  Q
    ||||||||||||| ||||||||||||||||||||| ||||||||    
T  30434423 accatcgcaaaaatctattttactggtaggatctctatttcccc 30434380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 288 - 400
Target Start/End: Complemental strand, 30058695 - 30058578
Alignment:
Q  288 gattagcaagtctgattactcgtatgttgtttacccttatct-gcctcaatcaccatcgcaaaattcaat----tttactggtaagatctctatttcccc 382  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||    || |||||||||||||||||||||||    
T  30058695 gattagcaagtctgattactcgtatgttgtttacccttatctggcctcgatcaccatcgcaaaattcaattcacttaactggtaagatctctatttcccc 30058596  T
Q  383 ttatctgcctcaattcac 400  Q
    ||||||||||||||||||    
T  30058595 ttatctgcctcaattcac 30058578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 316 - 400
Target Start/End: Original strand, 30340018 - 30340102
Alignment:
Q  316 gtttacccttatctgcctcaatcaccatcgcaaaattcaattttactggtaagatctctatttccccttatctgcctcaattcac 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30340018 gtttacccttatctgcctcaatcaccatcgcaaaattcaattttactggtaagatctctatttccccttatctgcctcaattcac 30340102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 19 - 186
Target Start/End: Complemental strand, 29851998 - 29851832
Alignment:
Q  19 gggaacaggggaggattgggacaagatagctcatattccaaaaataaagtttgagttataagaagcagagacgtttaccctttatct-gcctcaattacc 117  Q
    ||||||| | |||||||||||||||||| ||||||||||||| ||| ||||| | |  |||||||||||||| ||||||| |||||| |||||||| |||    
T  29851998 gggaacatgtgaggattgggacaagatatctcatattccaaatatacagtttaactattaagaagcagagacatttaccc-ttatctggcctcaatcacc 29851900  T
Q  118 atcgcaaaaaactattttactggtaggatctcaatttccccttcttatgtttggatttcaactgctcaa 186  Q
    |||||||| | |||||||||||||||| |||| ||||  ||||||||| ||||||||||||||||||||    
T  29851899 atcgcaaagatctattttactggtaggctctctattt-tccttcttatatttggatttcaactgctcaa 29851832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 316 - 400
Target Start/End: Complemental strand, 30748267 - 30748183
Alignment:
Q  316 gtttacccttatctgcctcaatcaccatcgcaaaattcaattttactggtaagatctctatttccccttatctgcctcaattcac 400  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  30748267 gtttacccttatctgcctcaatcacaatcgcaaaattcaattttactggtaagatctctatttccccttatttgcctcaattcac 30748183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 18 - 160
Target Start/End: Complemental strand, 30748343 - 30748199
Alignment:
Q  18 agggaacaggggaggattgggacaagatagctcatattccaaaaataaagttt---gagttataagaagcagagacgtttaccctttatctgcctcaatt 114  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||  ||||   |||   |||||||||||||||||||||||| ||||||||||||     
T  30748343 agggaacatgggaggattgggacaagatagctcatattccaaaaatactgtttacagaggattaagaagcagagacgtttaccctt-atctgcctcaatc 30748245  T
Q  115 accatcgcaaaaaactattttactggtaggatctcaatttcccctt 160  Q
    || |||||||||  | |||||||||||| |||||| ||||||||||    
T  30748244 acaatcgcaaaattcaattttactggtaagatctctatttcccctt 30748199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 18 - 158
Target Start/End: Original strand, 30243775 - 30243919
Alignment:
Q  18 agggaacaggggaggattgggacaagatagctcatattccaaaaataaag---tttgagttataagaag--cagagacgtttaccctttatctgcctcaa 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |  |   ||| ||    ||||||  ||||||||||||||||| |||||||||||    
T  30243775 agggaacaggggaggattgggacaagatagctcatattccaaaaagagtgattttttagaatgaagaagggcagagacgtttaccctt-atctgcctcaa 30243873  T
Q  113 ttaccatcgcaaaaaactattttactggtaggatctcaatttcccc 158  Q
    | ||||||||||||| | ||||||||||||||||||| ||||||||    
T  30243874 tcaccatcgcaaaaatcaattttactggtaggatctctatttcccc 30243919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 316 - 382
Target Start/End: Original strand, 30243853 - 30243919
Alignment:
Q  316 gtttacccttatctgcctcaatcaccatcgcaaaattcaattttactggtaagatctctatttcccc 382  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||    
T  30243853 gtttacccttatctgcctcaatcaccatcgcaaaaatcaattttactggtaggatctctatttcccc 30243919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 18 - 160
Target Start/End: Original strand, 30339928 - 30340086
Alignment:
Q  18 agggaacaggggaggattgggacaagatagctcatattccaaaaataaagttt--------gagtta---------taagaagcagagacgtttaccctt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||| |||||        ||||||         ||||||||||||||||||||||||    
T  30339928 agggaacaggggaggattgggacaagatagctcatattccaaatatacagtttaagtgatagagttaattgatgtttaagaagcagagacgtttaccctt 30340027  T
Q  101 tatctgcctcaattaccatcgcaaaaaactattttactggtaggatctcaatttcccctt 160  Q
     |||||||||||| ||||||||||||  | |||||||||||| |||||| ||||||||||    
T  30340028 -atctgcctcaatcaccatcgcaaaattcaattttactggtaagatctctatttcccctt 30340086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 316 - 382
Target Start/End: Complemental strand, 30434446 - 30434380
Alignment:
Q  316 gtttacccttatctgcctcaatcaccatcgcaaaattcaattttactggtaagatctctatttcccc 382  Q
    ||||||||||||||||||||||||||||||||||| || |||||||||||| |||||||||||||||    
T  30434446 gtttacccttatctgcctcaatcaccatcgcaaaaatctattttactggtaggatctctatttcccc 30434380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 316 - 384
Target Start/End: Complemental strand, 30481956 - 30481888
Alignment:
Q  316 gtttacccttatctgcctcaatcaccatcgcaaaattcaattttactggtaagatctctatttcccctt 384  Q
    ||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||| ||||||||||    
T  30481956 gtttacccttatctgccacaatcaacatcgcaaaaatcaattttactggtaagatctcaatttcccctt 30481888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 18 - 96
Target Start/End: Original strand, 17419294 - 17419373
Alignment:
Q  18 agggaacaggggaggattgggacaagatagctcatattccaaaaataaagtttgagttataagaagc-agagacgtttac 96  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||  |||  |||||||| ||||||||||||    
T  17419294 agggaaccggggaggattgggacaagatagctcatattccaaaaataaagttaaagtattaagaagcaagagacgtttac 17419373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 183 - 266
Target Start/End: Complemental strand, 29851808 - 29851725
Alignment:
Q  183 tcaaaaatctttatttttattctcgttgttgacttctttggaacccattccgcaggaagagatccagagtacatgaaagatatt 266  Q
    |||||||||||| | | ||||||| ||||||||||||||| ||||||||||| |||||||||||||| ||||||||| ||||||    
T  29851808 tcaaaaatctttttatatattctcattgttgacttctttgtaacccattccgtaggaagagatccagggtacatgaatgatatt 29851725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 316 - 384
Target Start/End: Complemental strand, 30058921 - 30058853
Alignment:
Q  316 gtttacccttatctgcctcaatcaccatcgcaaaattcaattttactggtaagatctctatttcccctt 384  Q
    |||||||||||||||||||| | |||||||||||| ||||||||||||||| |||||| ||||||||||    
T  30058921 gtttacccttatctgcctcattaaccatcgcaaaaatcaattttactggtaggatctcaatttcccctt 30058853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 30398714 - 30398658
Alignment:
Q  18 agggaacaggggaggattgggacaagatagctcatattccaaaaataaagtttgagt 74  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  30398714 agggaacaggggaggattgggacaagatagctcatattccaaaaatacagttggagt 30398658  T

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Target: chr5; HSP #21
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 316 - 384
Target Start/End: Complemental strand, 29870810 - 29870742
Alignment:
Q  316 gtttacccttatctgcctcaatcaccatcgcaaaattcaattttactggtaagatctctatttcccctt 384  Q
    ||||||||||||||||| |||||| |||||||||| ||||||||||| ||| |||||| ||||||||||    
T  29870810 gtttacccttatctgccacaatcaacatcgcaaaaatcaattttacttgtaggatctcaatttcccctt 29870742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 185 - 254
Target Start/End: Original strand, 30678848 - 30678917
Alignment:
Q  185 aaaaatctttatttttattctcgttgttgacttctttggaacccattccgcaggaagagatccagagtac 254  Q
    |||||||||||||||||||||||| ||| |||||||||||||||||||| ||| || || ||| ||||||    
T  30678848 aaaaatctttatttttattctcgtagttaacttctttggaacccattccacagaaacagttcctgagtac 30678917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 460 - 501
Target Start/End: Original strand, 30679043 - 30679084
Alignment:
Q  460 gtggagattgaattgaatggttaggatttcctttgatacaca 501  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  30679043 gtggagattgaattgaatggttaggatttcctttgatacaca 30679084  T

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Target: chr5; HSP #24
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 316 - 384
Target Start/End: Original strand, 30714565 - 30714633
Alignment:
Q  316 gtttacccttatctgcctcaatcaccatcgcaaaattcaattttactggtaagatctctatttcccctt 384  Q
    |||||||||||||||||||| |  ||||| ||||| ||||||||||||||| ||||||||||| |||||    
T  30714565 gtttacccttatctgcctcattagccatcacaaaaatcaattttactggtaggatctctatttaccctt 30714633  T

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Target: chr5; HSP #25
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 460 - 501
Target Start/End: Complemental strand, 30058518 - 30058477
Alignment:
Q  460 gtggagattgaattgaatggttaggatttcctttgatacaca 501  Q
    |||||||||||||||||||||||||||||||||||| |||||    
T  30058518 gtggagattgaattgaatggttaggatttcctttgacacaca 30058477  T

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Target: chr5; HSP #26
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 316 - 384
Target Start/End: Original strand, 30678721 - 30678790
Alignment:
Q  316 gtttaccctt-atctgcctcaatcaccatcgcaaaattcaattttactggtaagatctctatttcccctt 384  Q
    |||||||||| |||||||| |||||||||||||||| |  |||||||||||| |||||| ||||||||||    
T  30678721 gtttaccctttatctgccttaatcaccatcgcaaaaatatattttactggtaggatctcaatttcccctt 30678790  T

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Target: chr5; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 317 - 378
Target Start/End: Complemental strand, 29851925 - 29851863
Alignment:
Q  317 tttacccttatctg-cctcaatcaccatcgcaaaattcaattttactggtaagatctctattt 378  Q
    |||||||||||||| |||||||||||||||||||  || |||||||||||| | |||||||||    
T  29851925 tttacccttatctggcctcaatcaccatcgcaaagatctattttactggtaggctctctattt 29851863  T

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Target: chr5; HSP #28
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 460 - 501
Target Start/End: Original strand, 30714843 - 30714884
Alignment:
Q  460 gtggagattgaattgaatggttaggatttcctttgatacaca 501  Q
    |||||||||||| ||||||||||||||||||||||| |||||    
T  30714843 gtggagattgaactgaatggttaggatttcctttgacacaca 30714884  T

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Target: chr5; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 460 - 495
Target Start/End: Complemental strand, 30434138 - 30434103
Alignment:
Q  460 gtggagattgaattgaatggttaggatttcctttga 495  Q
    |||||||||||||||||||||||||||| |||||||    
T  30434138 gtggagattgaattgaatggttaggattgcctttga 30434103  T

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Target: chr7 (Bit Score: 88; Significance: 4e-42; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 18 - 186
Target Start/End: Complemental strand, 26705963 - 26705791
Alignment:
Q  18 agggaacaggggaggattgggacaagatagctcatattccaaaaataaagtttgagtt--at-aagaagc--agagacgtttaccctttatctgcctcaa 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| || | |   || |||||||  |||||||||||||||| |||||||||||    
T  26705963 agggaacaggggaggattgggacaagatagctcatattccaaaaataaagatttattagaatgaagaagcgcagagacgtttaccctt-atctgcctcaa 26705865  T
Q  113 ttaccatcgcaaaaaactattttactggtaggatctcaatttccccttcttatgtttggatttcaactgctcaa 186  Q
    | |||||| |||||| |||||||| ||||| ||||||  |||||||||||||||||||||||||||||| ||||    
T  26705864 tcaccatcacaaaaatctattttagtggtacgatctctgtttccccttcttatgtttggatttcaactgttcaa 26705791  T

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Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 316 - 384
Target Start/End: Complemental strand, 26705885 - 26705817
Alignment:
Q  316 gtttacccttatctgcctcaatcaccatcgcaaaattcaattttactggtaagatctctatttcccctt 384  Q
    ||||||||||||||||||||||||||||| ||||| || |||||| ||||| ||||||| |||||||||    
T  26705885 gtttacccttatctgcctcaatcaccatcacaaaaatctattttagtggtacgatctctgtttcccctt 26705817  T

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Target: chr4 (Bit Score: 77; Significance: 2e-35; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 138 - 266
Target Start/End: Original strand, 20298255 - 20298383
Alignment:
Q  138 tggtaggatctcaatttccccttcttatgtttggatttcaactgctcaaaaatctttatttttattctcgttgttgacttctttggaacccattccgcag 237  Q
    |||||||||||| ||||||  |||||||||||||||||||||| ||||||| | |||||||||||||||  |||||||||||||||||||| ||| | ||    
T  20298255 tggtaggatctctatttcctattcttatgtttggatttcaactactcaaaattttttatttttattctcaatgttgacttctttggaacccgttctgtag 20298354  T
Q  238 gaagagatccagagtacatgaaagatatt 266  Q
     |||||||||||||||||||||| |||||    
T  20298355 aaagagatccagagtacatgaaatatatt 20298383  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 20298150 - 20298194
Alignment:
Q  18 agggaacaggggaggattgggacaagatagctcatattccaaaaa 62  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  20298150 agggaacaggggaggattgggacaagatagctcatattccaaaaa 20298194  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 13615492 - 13615444
Alignment:
Q  18 agggaacaggggaggattgggacaagatagctcatattccaaaaataaa 66  Q
    |||||||| |||| || |||||||||||||| |||||||||||| ||||    
T  13615492 agggaacatgggaagactgggacaagatagcgcatattccaaaactaaa 13615444  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 7098046 - 7097997
Alignment:
Q  18 agggaacaggggaggattgggacaagatagctcatattccaaaaataaag 67  Q
    ||||||||||||| || |||||||||||||| |||||||||||| |||||    
T  7098046 agggaacaggggaagactgggacaagatagcccatattccaaaactaaag 7097997  T

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