View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13382_low_17 (Length: 465)

Name: NF13382_low_17
Description: NF13382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13382_low_17
NF13382_low_17
[»] chr8 (1 HSPs)
chr8 (18-465)||(30524996-30525464)
[»] chr2 (2 HSPs)
chr2 (57-206)||(36201953-36202104)
chr2 (91-209)||(43829729-43829847)
[»] chr3 (5 HSPs)
chr3 (21-180)||(50197019-50197180)
chr3 (91-180)||(22312338-22312427)
chr3 (91-202)||(20490965-20491076)
chr3 (265-298)||(22312207-22312240)
chr3 (162-203)||(47446128-47446169)
[»] chr7 (7 HSPs)
chr7 (18-88)||(2911997-2912068)
chr7 (91-209)||(8745779-8745897)
chr7 (210-298)||(5473277-5473365)
chr7 (163-209)||(36496221-36496267)
chr7 (151-232)||(33804305-33804390)
chr7 (137-209)||(35035378-35035450)
chr7 (162-214)||(48113867-48113919)
[»] chr4 (6 HSPs)
chr4 (143-206)||(54137260-54137323)
chr4 (90-206)||(55240471-55240587)
chr4 (91-208)||(36165366-36165487)
chr4 (263-298)||(1460397-1460432)
chr4 (21-51)||(36165718-36165748)
chr4 (91-123)||(34542325-34542357)
[»] chr6 (2 HSPs)
chr6 (152-209)||(32406985-32407042)
chr6 (144-202)||(12425734-12425792)
[»] chr1 (7 HSPs)
chr1 (26-84)||(25685697-25685756)
chr1 (263-298)||(30602341-30602376)
chr1 (91-209)||(49293052-49293170)
chr1 (167-203)||(10199982-10200018)
chr1 (21-88)||(10645557-10645625)
chr1 (143-179)||(15265528-15265564)
chr1 (24-72)||(35689906-35689954)
[»] chr5 (3 HSPs)
chr5 (23-101)||(6423929-6424010)
chr5 (140-209)||(33408150-33408219)
chr5 (146-209)||(42042143-42042206)


Alignment Details
Target: chr8 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 18 - 465
Target Start/End: Complemental strand, 30525464 - 30524996
Alignment:
Q  18 gaaggtactcaaacatatttatacactcaatagctcaggaatctgaacaatgtggacaaataacaaactacgacaacttcaa------------caccca 105  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||            |||| |    
T  30525464 gaaggtactcaaacatatttatacactcaatagctcaggaacctgaacaatgtggacaaataacaaactacgacaacttcaaaacgaacttcatcaccta 30525365  T
Q  106 ctctcatgtctagcgtggacttgagtccagcttccatattgcaatccttaacttgactctgataccatgttaaatgtgcttgtatctcatcccaaaagct 205  Q
    |||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  30525364 ctctcacgtctagcgtggacttgggtccagcttccatattgcaatccttaactcgactctgataccatgttaaatgtgcttgtatctcatcccaaaagct 30525265  T
Q  206 agct------------gtactcaaacatatttatacactaaacagcactagaacctaaacaatatagagcaaataacaaactacaaactacttcaaaacc 293  Q
    ||||            |||||||||||||||||||||||||||| |||||||||||||| ||| |||||||||||||||||||||||| ||||||||| |    
T  30525264 agctcaaagaatgagagtactcaaacatatttatacactaaacaacactagaacctaaataatgtagagcaaataacaaactacaaacaacttcaaaagc 30525165  T
Q  294 aacttaacattactcactaacaaaagtcggaggagaacatgagatgctcaagaggtaaaccccgtccattcatacaacaacacaaaatcacacaaattgt 393  Q
    |||||||||||||| |||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30525164 aacttaacattactgactaacaaaagtcggag---aacatgagatgctcaagaggtaaaccccgtccattcatacaacaacacaaaatcacacaaattgt 30525068  T
Q  394 atcacaagtggttaggtcaattcatataccccctccaaacatatgcccaattatttctatttgtcttccctt 465  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  30525067 atcacaagtggttaggtcaattcatataccccatccaaacatatgcccaattatttctatttgtcttccctt 30524996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 57 - 206
Target Start/End: Complemental strand, 36202104 - 36201953
Alignment:
Q  57 aatctgaacaatgtg-gacaaataacaaactacga-caacttcaacacccactctcatgtctagcgtggacttgagtccagcttccatattgcaatcctt 154  Q
    ||||||||||||||| || |||||||||||||| | ||| |||||||  |||||||| || || ||||  ||||||||||  ||||| |||| ||| |||    
T  36202104 aatctgaacaatgtgtgataaataacaaactacaaacaatttcaacattcactctcacgtttaacgtgagcttgagtccaatttccacattgtaattctt 36202005  T
Q  155 aacttgactctgataccatgttaaatgtgcttgtatctcatcccaaaagcta 206  Q
    |||  ||||||||||||||||||||  |||||| ||||| ||||||||||||    
T  36202004 aacccgactctgataccatgttaaacatgcttgaatctcctcccaaaagcta 36201953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 91 - 209
Target Start/End: Original strand, 43829729 - 43829847
Alignment:
Q  91 caacttcaacacccactctcatgtctagcgtggacttgagtccagcttccatattgcaatccttaacttgactctgataccatgttaaatgtgcttgtat 190  Q
    |||||||||||||||| |||| |||||  |||| | ||| |||| || ||| | |||||||||||||  ||||||||||||||||| |||| ||||  ||    
T  43829729 caacttcaacacccaccctcacgtctaatgtgggcctgaatccaactcccacactgcaatccttaacccgactctgataccatgtttaatgagctttgat 43829828  T
Q  191 ctcatcccaaaagctagct 209  Q
    |||||||||| ||||||||    
T  43829829 ctcatcccaacagctagct 43829847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 5e-17; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 21 - 180
Target Start/End: Complemental strand, 50197180 - 50197019
Alignment:
Q  21 ggtactcaaacatatttatacactcaatagctcaggaatctgaacaatgtgg-acaaataacaaactacga-caacttcaacacccactctcatgtctag 118  Q
    ||||||| | ||||||||||||||||| || ||  ||| |||| |||||||| |||||||||||||||  | |||||||||||||||||||||   ||||    
T  50197180 ggtactcgaccatatttatacactcaacagttcgtgaacctgagcaatgtgggacaaataacaaactataaacaacttcaacacccactctcacccctag 50197081  T
Q  119 cgtggacttgagtccagcttccatattgcaatccttaacttgactctgataccatgttaaat 180  Q
     ||||   | ||||||  ||||| ||||||||||||||   |||| ||||||||||||||||    
T  50197080 tgtgggtctaagtccaatttccacattgcaatccttaatccgactatgataccatgttaaat 50197019  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 91 - 180
Target Start/End: Complemental strand, 22312427 - 22312338
Alignment:
Q  91 caacttcaacacccactctcatgtctagcgtggacttgagtccagcttccatattgcaatccttaacttgactctgataccatgttaaat 180  Q
    |||||||||||| ||||| || ||||||||||||  ||||||||  || || ||||||||| |||||  |||||||||||||||||||||    
T  22312427 caacttcaacactcactcacacgtctagcgtggatctgagtccaatttgcacattgcaatctttaacccgactctgataccatgttaaat 22312338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 91 - 202
Target Start/End: Complemental strand, 20491076 - 20490965
Alignment:
Q  91 caacttcaacacccactctcatgtctagcgtggacttgagtccagcttccatattgcaatccttaacttgactctgataccatgttaaatgtgcttgtat 190  Q
    ||||||||| |||||| |||| |||||| |||| | ||  ||||  | ||| |||| |||| ||||| || |||||||||||||||||||| ||||| ||    
T  20491076 caacttcaatacccaccctcacgtctagtgtgggcctggatccaattcccacattgtaatcattaacctggctctgataccatgttaaatgagcttggat 20490977  T
Q  191 ctcatcccaaaa 202  Q
    ||||||||||||    
T  20490976 ctcatcccaaaa 20490965  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 265 - 298
Target Start/End: Complemental strand, 22312240 - 22312207
Alignment:
Q  265 aataacaaactacaaactacttcaaaaccaactt 298  Q
    ||||||||||||||||| ||||||||||||||||    
T  22312240 aataacaaactacaaacaacttcaaaaccaactt 22312207  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 162 - 203
Target Start/End: Complemental strand, 47446169 - 47446128
Alignment:
Q  162 ctctgataccatgttaaatgtgcttgtatctcatcccaaaag 203  Q
    ||||||||||||||||| || ||||| |||||||||||||||    
T  47446169 ctctgataccatgttaattgggcttggatctcatcccaaaag 47446128  T

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Target: chr7 (Bit Score: 44; Significance: 7e-16; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 2911997 - 2912068
Alignment:
Q  18 gaaggtactcaaacatatttatacactcaatagctcaggaatctgaacaatgt-ggacaaataacaaactac 88  Q
    ||||||| |||||||||||||||||||||||||| |||||| |||| | |||| ||||||||||||||||||    
T  2911997 gaaggtattcaaacatatttatacactcaatagcccaggaacctgatccatgtgggacaaataacaaactac 2912068  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 91 - 209
Target Start/End: Original strand, 8745779 - 8745897
Alignment:
Q  91 caacttcaacacccactctcatgtctagcgtggacttgagtccagcttccatattgcaatccttaacttgactctgataccatgttaaatgtgcttgtat 190  Q
    |||||| ||||| ||| |||||| ||||||||| | ||||||||  |  |||| || ||||||||||   ||||||||| ||||||||||| ||||| ||    
T  8745779 caactttaacactcaccctcatgcctagcgtggccctgagtccaattcacatactggaatccttaacccaactctgatatcatgttaaatgagcttggat 8745878  T
Q  191 ctcatcccaaaagctagct 209  Q
    ||||||||||||| |||||    
T  8745879 ctcatcccaaaagttagct 8745897  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 210 - 298
Target Start/End: Complemental strand, 5473365 - 5473277
Alignment:
Q  210 gtactcaaacatatttatacactaaacagcactagaacctaaacaatatagagcaaataacaaactacaaactacttcaaaaccaactt 298  Q
    ||||||| ||||||||||||| | | || | | ||||| | | ||||||| | ||||||||||||||||||| ||||||||||||||||    
T  5473365 gtactcatacatatttatacatttagcaacccgagaacttgagcaatatataacaaataacaaactacaaacaacttcaaaaccaactt 5473277  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 163 - 209
Target Start/End: Original strand, 36496221 - 36496267
Alignment:
Q  163 tctgataccatgttaaatgtgcttgtatctcatcccaaaagctagct 209  Q
    ||||||||||||| ||||| ||||| |||||||||||||||||||||    
T  36496221 tctgataccatgtgaaatgggcttgaatctcatcccaaaagctagct 36496267  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 151 - 232
Target Start/End: Original strand, 33804305 - 33804390
Alignment:
Q  151 ccttaacttgactctgataccatgttaaatgtgcttgtatctcatcccaaaagctagctg----tactcaaacatatttatacact 232  Q
    ||||||||  ||||||||||||||||||||  || || ||||||||||||||| ||| ||    ||||||| ||||||||||||||    
T  33804305 ccttaactcaactctgataccatgttaaataggcatgaatctcatcccaaaagttagttgatgatactcaatcatatttatacact 33804390  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 209
Target Start/End: Original strand, 35035378 - 35035450
Alignment:
Q  137 ttccatattgcaatccttaacttgactctgataccatgttaaatgtgcttgtatctcatcccaaaagctagct 209  Q
    ||||| |||||| || ||||| |  ||||||||| ||||| |||| | ||| |||||||||||||||||||||    
T  35035378 ttccacattgcattctttaacctagctctgatactatgttcaatgggtttggatctcatcccaaaagctagct 35035450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 162 - 214
Target Start/End: Complemental strand, 48113919 - 48113867
Alignment:
Q  162 ctctgataccatgttaaatgtgcttgtatctcatcccaaaagctagctgtact 214  Q
    ||||||||||||| | |||| ||||| |||||||||||||||| |||| ||||    
T  48113919 ctctgataccatggtgaatgggcttggatctcatcccaaaagccagctctact 48113867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 7e-16; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 143 - 206
Target Start/End: Original strand, 54137260 - 54137323
Alignment:
Q  143 attgcaatccttaacttgactctgataccatgttaaatgtgcttgtatctcatcccaaaagcta 206  Q
    |||||||||||||||  ||||||||||||||||||| || ||||| ||||||||||||||||||    
T  54137260 attgcaatccttaacccgactctgataccatgttaattgagcttgaatctcatcccaaaagcta 54137323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 90 - 206
Target Start/End: Complemental strand, 55240587 - 55240471
Alignment:
Q  90 acaacttcaacacccactctcatgtctagcgtggacttgagtccagcttccatattgcaatccttaacttgactctgataccatgttaaatgtgcttgta 189  Q
    |||||||||||| |||| |||| |||||||  |  ||||||||||  | | | ||||||||| |||||  |||||| ||||||||||||||  ||||| |    
T  55240587 acaacttcaacatccaccctcacgtctagcaagagcttgagtccaattcctacattgcaatctttaacccgactctaataccatgttaaattggcttgaa 55240488  T
Q  190 tctcatcccaaaagcta 206  Q
    |||||||||||||||||    
T  55240487 tctcatcccaaaagcta 55240471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 91 - 208
Target Start/End: Original strand, 36165366 - 36165487
Alignment:
Q  91 caacttcaacacccactctcatgtctagcgtggacttgagtccagctt----ccatattgcaatccttaacttgactctgataccatgttaaatgtgctt 186  Q
    |||||||||||||||| |||| | ||||||||| ||||||||||  |     ||| ||||||||||||||| ||  | || ||||||| |||||| ||||    
T  36165366 caacttcaacacccaccctcacgcctagcgtgggcttgagtccaattctgtcccacattgcaatccttaacctggttttgttaccatggtaaatgggctt 36165465  T
Q  187 gtatctcatcccaaaagctagc 208  Q
    | |||||||||||||| |||||    
T  36165466 ggatctcatcccaaaatctagc 36165487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 263 - 298
Target Start/End: Complemental strand, 1460432 - 1460397
Alignment:
Q  263 caaataacaaactacaaactacttcaaaaccaactt 298  Q
    ||||||||||||||||||| ||||||||||||||||    
T  1460432 caaataacaaactacaaacaacttcaaaaccaactt 1460397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 51
Target Start/End: Original strand, 36165718 - 36165748
Alignment:
Q  21 ggtactcaaacatatttatacactcaatagc 51  Q
    |||||||||||||||||||||||||||||||    
T  36165718 ggtactcaaacatatttatacactcaatagc 36165748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 91 - 123
Target Start/End: Original strand, 34542325 - 34542357
Alignment:
Q  91 caacttcaacacccactctcatgtctagcgtgg 123  Q
    ||||||||||||||||||||||| |||||||||    
T  34542325 caacttcaacacccactctcatgcctagcgtgg 34542357  T

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Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 152 - 209
Target Start/End: Original strand, 32406985 - 32407042
Alignment:
Q  152 cttaacttgactctgataccatgttaaatgtgcttgtatctcatcccaaaagctagct 209  Q
    |||||| ||||||||||||||||||||||| | ||| |||||||||||||||||||||    
T  32406985 cttaacctgactctgataccatgttaaatgagtttggatctcatcccaaaagctagct 32407042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 144 - 202
Target Start/End: Complemental strand, 12425792 - 12425734
Alignment:
Q  144 ttgcaatccttaacttgactctgataccatgttaaatgtgcttgtatctcatcccaaaa 202  Q
    ||||||| || |||| |||||||||||||||||||||| | ||| |||||||| |||||    
T  12425792 ttgcaatactcaactcgactctgataccatgttaaatgggattgaatctcatcacaaaa 12425734  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 26 - 84
Target Start/End: Complemental strand, 25685756 - 25685697
Alignment:
Q  26 tcaaacatatttatacactcaatagctcaggaatctgaacaatgtg-gacaaataacaaa 84  Q
    |||||||||||||||||||||| | ||||| ||||||||||||||| |||||||||||||    
T  25685756 tcaaacatatttatacactcaacaactcagaaatctgaacaatgtgagacaaataacaaa 25685697  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 263 - 298
Target Start/End: Complemental strand, 30602376 - 30602341
Alignment:
Q  263 caaataacaaactacaaactacttcaaaaccaactt 298  Q
    ||||||||||||||||||| ||||||||||||||||    
T  30602376 caaataacaaactacaaacaacttcaaaaccaactt 30602341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 91 - 209
Target Start/End: Complemental strand, 49293170 - 49293052
Alignment:
Q  91 caacttcaacacccactctcatgtctagcgtggacttgagtccagcttccatattgcaatccttaacttgactctgataccatgttaaatgtgcttgtat 190  Q
    |||||||||||| ||| |||| ||||| | |||  |||||||||  | ||| ||||| |||||||||  |||||| |||| | || |||| ||| || ||    
T  49293170 caacttcaacactcaccctcacgtctatcatgggtttgagtccaattcccacattgcgatccttaacccgactctaatacgacgtaaaatatgcctgaat 49293071  T
Q  191 ctcatcccaaaagctagct 209  Q
    |||||| ||||||||||||    
T  49293070 ctcatctcaaaagctagct 49293052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 167 - 203
Target Start/End: Complemental strand, 10200018 - 10199982
Alignment:
Q  167 ataccatgttaaatgtgcttgtatctcatcccaaaag 203  Q
    ||||||||||||||| ||||| |||||||||||||||    
T  10200018 ataccatgttaaatgggcttgaatctcatcccaaaag 10199982  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 21 - 88
Target Start/End: Complemental strand, 10645625 - 10645557
Alignment:
Q  21 ggtactcaaacatatttatacactcaatagctcaggaatctgaacaatgt-ggacaaataacaaactac 88  Q
    ||||||||| ||||||||||||||||||| | | |||| |||| | |||| ||||||| ||||||||||    
T  10645625 ggtactcaagcatatttatacactcaataccgcgggaacctgagcgatgtgggacaaacaacaaactac 10645557  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 143 - 179
Target Start/End: Complemental strand, 15265564 - 15265528
Alignment:
Q  143 attgcaatccttaacttgactctgataccatgttaaa 179  Q
    |||| |||||||||||| |||||||||||||||||||    
T  15265564 attgtaatccttaacttaactctgataccatgttaaa 15265528  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 72
Target Start/End: Original strand, 35689906 - 35689954
Alignment:
Q  24 actcaaacatatttatacactcaatagctcaggaatctgaacaatgtgg 72  Q
    |||||||||||||||||||||||| ||| | | |||| |||||||||||    
T  35689906 actcaaacatatttatacactcaacagcccggaaatccgaacaatgtgg 35689954  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 23 - 101
Target Start/End: Complemental strand, 6424010 - 6423929
Alignment:
Q  23 tactcaaacatatttatacactcaatagct-caggaatctgaacaatgtg-gacaaataacaaactac-gacaacttcaaca 101  Q
    ||||||||||||||||||||||||| ||||  || ||  ||||||||||| ||||||||||||||||| |||||||||||||    
T  6424010 tactcaaacatatttatacactcaacagctggagaaacttgaacaatgtgagacaaataacaaactacagacaacttcaaca 6423929  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 140 - 209
Target Start/End: Original strand, 33408150 - 33408219
Alignment:
Q  140 catattgcaatccttaacttgactctgataccatgttaaatgtgcttgtatctcatcccaaaagctagct 209  Q
    |||||||||||| ||||   |||||||||||||||||||||| | ||| ||||||||||||||| |||||    
T  33408150 catattgcaatcattaaaccgactctgataccatgttaaatgagtttgaatctcatcccaaaagttagct 33408219  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 146 - 209
Target Start/End: Complemental strand, 42042206 - 42042143
Alignment:
Q  146 gcaatccttaacttgactctgataccatgttaaatgtgcttgtatctcatcccaaaagctagct 209  Q
    ||||||||||||  |||||||||||||||||||||  | ||| |||||||||||||| ||||||    
T  42042206 gcaatccttaacccgactctgataccatgttaaataagtttggatctcatcccaaaaactagct 42042143  T

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