View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13382_low_18 (Length: 430)
Name: NF13382_low_18
Description: NF13382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13382_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 1 - 418
Target Start/End: Complemental strand, 51039636 - 51039226
Alignment:
| Q |
1 |
ttgaaatgtttttcacactttcaatatgatgacatcaacattttggcatctctcatcctcaatcttgtatgtctaataaaacaatttggtaggcgtggac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
51039636 |
ttgaaatgtttttcacactttcaatatgatgacatcaacattttggcatctctcatcctcaatcttgtatgtctaataaaacaatttggtagacgtggac |
51039537 |
T |
|
| Q |
101 |
acctcaattgatgtatgcatcttgcaagaaaaatttacaaaagaaaatgatgtgatataaatgatagattagtaatgcactaatgttgtttggtacgaaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
51039536 |
acctcaattgatgtatgcatcttgcaagaaaaatttacaaaagaaaatgatgtgatataaatgatagattagtaatgcactaatgttgtatggtacgaaa |
51039437 |
T |
|
| Q |
201 |
atagtatatacgaaaagcaagaattaaactaaattaaagttgtaattaccaataaatacatcaacaattttctatatcaccatattacccttatatggca |
300 |
Q |
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||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| |
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| T |
51039436 |
atagtatctacgaaaagcaagaattacactaaattaaagttgtaattaccaataaatccatcaacaattttatatatcaccatattacccttatatggca |
51039337 |
T |
|
| Q |
301 |
agtgctttcttactgtcttcaaatttcgttaaaagctttccgtacaacatagcaatgattagagagatagagaagnnnnnnnnntgaagtattaaatgaa |
400 |
Q |
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| T |
51039336 |
agtgctttcttactg---tcaaatttcgttaaaagctttccgtacgacatagcaatgattagagagatagagaa----aaaaaatgaagtattaaatgaa |
51039244 |
T |
|
| Q |
401 |
tgtttgaaaattgatgat |
418 |
Q |
| |
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| T |
51039243 |
tgtttgaaaatttatgat |
51039226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 218 - 357
Target Start/End: Original strand, 12170179 - 12170318
Alignment:
| Q |
218 |
caagaattaaactaaattaaagttgtaattaccaataaatacatcaacaattttctatatcaccatattacccttatatggcaagtgctttcttactgtc |
317 |
Q |
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| T |
12170179 |
caagaattacactaatttaaagttgtaattaccaatctatccatcagctattttctatattaccatattgcccttgtatggcaagtgttttcctactgtc |
12170278 |
T |
|
| Q |
318 |
ttcaaatttcgttaaaagctttccgtacaacatagcaatg |
357 |
Q |
| |
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| T |
12170279 |
gtataatttcgttaaaatcttttcttactatatagcaatg |
12170318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 210 - 357
Target Start/End: Original strand, 45473189 - 45473336
Alignment:
| Q |
210 |
acgaaaagcaagaattaaactaaattaaagttgtaattaccaataaatacatcaacaattttctatatcaccatattacccttatatggcaagtgctttc |
309 |
Q |
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||||||||||||||||| ||||| |||||||||||||||||||| || ||||| | ||||||||||| ||||||| ||||| ||||||||||| ||| |
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| T |
45473189 |
acgaaaagcaagaattacactaatttaaagttgtaattaccaatctatccatcagctattttctatattaccatatcgcccttgtatggcaagtgttttt |
45473288 |
T |
|
| Q |
310 |
ttactgtcttcaaatttcgttaaaagctttccgtacaacatagcaatg |
357 |
Q |
| |
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||||||| | ||||||||||||| |||| | ||| | ||||||||| |
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|
| T |
45473289 |
ctactgtcgtataatttcgttaaaatcttttcttactatatagcaatg |
45473336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 209 - 304
Target Start/End: Original strand, 31195838 - 31195933
Alignment:
| Q |
209 |
tacgaaaagcaagaattaaactaaattaaagttgtaattaccaataaatacatcaacaattttctatatcaccatattacccttatatggcaagtg |
304 |
Q |
| |
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|||||||||||||||||| ||||| ||||||||||||||||| ||| || ||||| | ||||||||||| ||||| || ||||| |||| |||||| |
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| T |
31195838 |
tacgaaaagcaagaattacactaatttaaagttgtaattaccgatatatccatcagccattttctatattaccatgttgcccttgtatgacaagtg |
31195933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 210 - 277
Target Start/End: Complemental strand, 14018009 - 14017942
Alignment:
| Q |
210 |
acgaaaagcaagaattaaactaaattaaagttgtaattaccaataaatacatcaacaattttctatat |
277 |
Q |
| |
|
||||||||||||||||| ||||| || ||||||||||||||||| || || || | ||||||||||| |
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|
| T |
14018009 |
acgaaaagcaagaattacactaattttaagttgtaattaccaatctattcaacagctattttctatat |
14017942 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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