View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13382_low_20 (Length: 423)
Name: NF13382_low_20
Description: NF13382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13382_low_20 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 5829383 - 5829161
Alignment:
| Q |
1 |
ctgaaatctcagaaataggtgcagctgcaggtgctaacgcaatatcctgtgaaatcgatgaagcaggaccaagtgcagctcctgagctagtaagttcgat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
5829383 |
ctgaaatctcagaaataggtgcagctgcaggtgctaacgcaatatcctgtgaaatcgatgaagcaggaccaagtgcagctcctgagctagtaagttcaat |
5829284 |
T |
|
| Q |
101 |
agtagcacgacgaggattggtcttgtgtttctcacaaagttccggcaaaaatactcctgttgtcacattaatgcagcttagttatcatatataacaaaac |
200 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
5829283 |
tgtagcacgacgagggttggtcttgtgtttctcacaaagttccggcaaaaatactcctgttgtcacattaatgcagcttagttatcgtatataacaaaac |
5829184 |
T |
|
| Q |
201 |
-aaaagagttaaaaccatactat |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
5829183 |
aaaaagagttaaaaccatactat |
5829161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 16 - 185
Target Start/End: Original strand, 5822521 - 5822690
Alignment:
| Q |
16 |
taggtgcagctgcaggtgctaacgcaatatcctgtgaaatcgatgaagcaggaccaagtgcagctcctgagctagtaagttcgatagtagcacgacgagg |
115 |
Q |
| |
|
||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |
|
|
| T |
5822521 |
taggtgcagatgctggtgctaacgcaatatcctgtgaaatcgatgaagcaggaccaagtgcagctcctgagctagtaagttcaattgtagcacgacgagg |
5822620 |
T |
|
| Q |
116 |
attggtcttgtgtttctcacaaagttccggcaaaaatactcctgttgtcacattaatgcagcttagttat |
185 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |
|
|
| T |
5822621 |
gttgttcttgtgtttctcacaaagttccggcaaaaatactcctagagtcacatgaatgcagcttagttat |
5822690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 300 - 415
Target Start/End: Original strand, 5822787 - 5822904
Alignment:
| Q |
300 |
gtagagctcattactcacttgaactgaatcacttagttattttcttatatcatgtattggtcttgggaagtaa--nnnnnnnnattctcattgactttga |
397 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
5822787 |
gtagagctcattacccacttgaactgaatcacttagttattttcttatatcatgtattggtcttgggaagtaaatttttttttattctcattgactttga |
5822886 |
T |
|
| Q |
398 |
caaatgtatgtgatgatg |
415 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
5822887 |
caaatgtatgtgatgatg |
5822904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 17 - 168
Target Start/End: Original strand, 5831980 - 5832131
Alignment:
| Q |
17 |
aggtgcagctgcaggtgctaacgcaatatcctgtgaaatcgatgaagcaggaccaagtgcagctcctgagctagtaagttcgatagtagcacgacgagga |
116 |
Q |
| |
|
|||||||||||||||||||||| |||| |||| ||||| || ||||| || |||| ||||||||| ||||| ||| |||| ||||||||||||| |
|
|
| T |
5831980 |
aggtgcagctgcaggtgctaacacaatgtcctctgaaactgaagaagccgggccaaatgcagctccggagctcacaagctcgaccatagcacgacgaggg |
5832079 |
T |
|
| Q |
117 |
ttggtcttgtgtttctcacaaagttccggcaaaaatactcctgttgtcacat |
168 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
5832080 |
ttggtcttgtgtttctcacatagttctggcaaaaatactcctgttgtcacat |
5832131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 304 - 415
Target Start/End: Complemental strand, 5829088 - 5828973
Alignment:
| Q |
304 |
agctcattactcacttgaactgaatcacttagttattttcttatatcatgtattggtcttgggaagta----annnnnnnnattctcattgactttgaca |
399 |
Q |
| |
|
|||||||||| ||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||| | |||| |||||||||||||| |
|
|
| T |
5829088 |
agctcattaccaacttgaactgaatcagttaattattttcttatatcatgtatttgtcttgggaagtaaaatattttttttattcacattgactttgaca |
5828989 |
T |
|
| Q |
400 |
aatgtatgtgatgatg |
415 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
5828988 |
aatgtatgtgatgatg |
5828973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University