View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13382_low_21 (Length: 417)
Name: NF13382_low_21
Description: NF13382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13382_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 162; Significance: 2e-86; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 10 - 178
Target Start/End: Complemental strand, 52638841 - 52638672
Alignment:
| Q |
10 |
acatcatcaactcatgtcttgtccttaacaataaagactggttgtgatatatcatcctttggctgctatatctcagtgatatcttaccctctctcaatat |
109 |
Q |
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| T |
52638841 |
acatcatcaactcatgtcttgtccttaacaataaagactggttgtgatatatcatcctttggctgctatatctcagtgatatcttaccctctctcaatat |
52638742 |
T |
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| Q |
110 |
atttgtata-tttgttattatcttgagacttttgtttgttgctgtgatttactcaaggcgtatcctctta |
178 |
Q |
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| T |
52638741 |
atttgtatagtttgttattatcttgagacttttgtttgttgctgtgatttactcaaggcgtatcctctta |
52638672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 223 - 401
Target Start/End: Complemental strand, 52638570 - 52638395
Alignment:
| Q |
223 |
atgttttgaccaacttgcacttgctatgccaactcttcttctatttggtgtagaaaggaatatttggtttcgaacaattgattcagtgtatctttaggta |
322 |
Q |
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| T |
52638570 |
atgttttgaccaacttgcacttgctatgacaactcttct---atttggtgtagaaaggaatatttggtttcgaacaattgattcagtgtatctttaggta |
52638474 |
T |
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| Q |
323 |
cagtaatcactatcaatgtaattttgttgaagttacaaagtacattaattatgccaaactcatcatcaatccaaatatg |
401 |
Q |
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| T |
52638473 |
cagtaatcactatcaatgtaattttgttgaagttacaaagtacattaattatgccaaactcatcatcaatccaaatatg |
52638395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 177 - 212
Target Start/End: Complemental strand, 52638593 - 52638558
Alignment:
| Q |
177 |
taacaattattttgaccaaacaaatgttttgaccaa |
212 |
Q |
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| T |
52638593 |
taacaattattttgaccaaacaaatgttttgaccaa |
52638558 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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