View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13382_low_24 (Length: 389)
Name: NF13382_low_24
Description: NF13382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13382_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 26 - 380
Target Start/End: Complemental strand, 39308537 - 39308182
Alignment:
| Q |
26 |
ttagtcatatagggtaaaattgtgaaactgaaatcttaccnnnnnnnnn-ggtactaaccttaggagtaaaatttgattggttgaaatgataatagatat |
124 |
Q |
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| T |
39308537 |
ttagtcatatagggtaaaattgtgaagctgaaatcttactttttttttttggtactaaccttaggagtaaaatttgattggttgaaatgataataggtat |
39308438 |
T |
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| Q |
125 |
ttctaaatacatctcacactatattgacattgatatgtaagtgtaaatggattgacatacatacatttttctagtttaaggccttgtaatatttctttat |
224 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39308437 |
ttctaaatacatctcacactatattgacattgatatgtaagtgtaaatggattgacatacatacatttttctagtttaaggccttgtaatatttctttat |
39308338 |
T |
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| Q |
225 |
tttctgtgttcaagacatgattttgccaccattgcaatgcttaaaatatgtggtttttgttgttatgaaactgtaacaggaaaagtggttttgcgccttc |
324 |
Q |
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| T |
39308337 |
tttatgtgttcaagacatgattttgccaccattgcaatgcttaaaatatgtggtttttgttgttatgaaactgtaacaggaaaagtggttttgcgccttc |
39308238 |
T |
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| Q |
325 |
aaatgagacaacaactaagttgatctttgaatatttcgagatagtttgtccatatt |
380 |
Q |
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| T |
39308237 |
aaatgagacaacaactaagttgatctttgaatattttgagatagtttgtccatatt |
39308182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 211 - 307
Target Start/End: Complemental strand, 39300537 - 39300439
Alignment:
| Q |
211 |
taatatttctttattttctgtg--ttcaagacatgattttgccaccattgcaatgcttaaaatatgtggtttttgttgttatgaaactgtaacaggaaa |
307 |
Q |
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||||| ||||||||||||| || |||||||||| |||||||||||| | ||||| |||| |||||||||||||||||| ||||| || || ||||||| |
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| T |
39300537 |
taatagttctttattttctttgaattcaagacatcattttgccaccactccaatgtttaagatatgtggtttttgttgtaatgaatctctagcaggaaa |
39300439 |
T |
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