View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13382_low_26 (Length: 381)
Name: NF13382_low_26
Description: NF13382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13382_low_26 |
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Alignment Details
Target: chr5 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 16 - 366
Target Start/End: Complemental strand, 38520483 - 38520130
Alignment:
| Q |
16 |
tttctttgtaccaattttgtattactatacagtaaaatccactgtgaaaatcaaactagttcaattttgtaacatgttcttatgaattgcaattttatat |
115 |
Q |
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| T |
38520483 |
tttctttgcaccaattttgtattactatacagtaaaatccattgtgaaaatcaaactagttcaattttgtaacatgttcttatgaattgcaatttgatat |
38520384 |
T |
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| Q |
116 |
gcttatataagtctgttcatggaaaccagttggatgatctattaatcaaatgcgaatattgttgaaaaagttaataaatatttgtcttagtatttctcaa |
215 |
Q |
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| T |
38520383 |
gcttatataaggctgttcatggaaaccagttggatgatctattaatcaaatgcgaatattgttgaaaaagttaatgaatatttgtcttagtatttctcaa |
38520284 |
T |
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| Q |
216 |
gttagaagtcatatgagattgaacaaaattctgaatgtgacccttataagttgtaaaga---aatggagggagtattagttactagacttgagcagtgtt |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
38520283 |
gttagaagtcatatgagattgaacaaaattctgaatgtgacacttataagttgtaaagaaataatggagggagtattagttactagacttgagcagtgtt |
38520184 |
T |
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| Q |
313 |
tatcaaagactatgcagcattgacaacacttcagatgaaggcgtatttgttgtt |
366 |
Q |
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|||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |
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| T |
38520183 |
tatcaaagactatgcagcgttgaccacacttcagatgaaggcgtatttgttgtt |
38520130 |
T |
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