View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13382_low_29 (Length: 348)
Name: NF13382_low_29
Description: NF13382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13382_low_29 |
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Alignment Details
Target: chr1 (Bit Score: 79; Significance: 7e-37; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 227 - 344
Target Start/End: Complemental strand, 15593740 - 15593622
Alignment:
| Q |
227 |
catgatgaacttttgaatagagtac-atgtaacaggactggttttgctctataaagcttgaacttgaacacctacatgacattgacacgttgacaccact |
325 |
Q |
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| T |
15593740 |
catgatgaacttttgaatacagtactatgtaataggactggttttgatctataaagcttgaacgtgaatgcttacatgacattgacacattgacaccact |
15593641 |
T |
|
| Q |
326 |
aataatttgaaaaaataga |
344 |
Q |
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| T |
15593640 |
aataatttgaaaaaataga |
15593622 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 29 - 191
Target Start/End: Complemental strand, 15593902 - 15593742
Alignment:
| Q |
29 |
aacatgttacttaaattgtttgtgtgttttgtcttgttttctagttttagtagagcatatttgaaacact-gcttccaaattaagatccctatcaggctc |
127 |
Q |
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|||||||| |||||||||||||||| || |||||||||||||||||||||||| ||||||||||| || |||||||||| |||||||||||||||| | |
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| T |
15593902 |
aacatgttgcttaaattgtttgtgttttctgtcttgttttctagttttagtag--catatttgaaaaccttgcttccaaatcaagatccctatcaggcac |
15593805 |
T |
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| Q |
128 |
ttgtgctttagttaataatcnnnnnnnggtttatttgagctttctttgcaccttgtctcccaaa |
191 |
Q |
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| T |
15593804 |
ttgtgctttagttaataatc-gtttttggtttatttgagctttctatggaccttgtcttccaaa |
15593742 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 299 - 341
Target Start/End: Complemental strand, 42720967 - 42720925
Alignment:
| Q |
299 |
acatgacattgacacgttgacaccactaataatttgaaaaaat |
341 |
Q |
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| T |
42720967 |
acatgacactgacacgttgacaccgctaataatttgaaaaaat |
42720925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 22 - 147
Target Start/End: Complemental strand, 1767241 - 1767117
Alignment:
| Q |
22 |
tgcatggaacatgttacttaaattgtttgtgtgttttgtcttgttttctagttttagtagagcatatttg-aaacactgcttccaaattaagatccctat |
120 |
Q |
| |
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||||| ||||||| |||||||||||||| ||| || | ||||||||| |||||||||| | |||||||| |||| |||||| | || ||||||||| | |
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| T |
1767241 |
tgcattgaacatgctacttaaattgtttctgttttctttcttgttttttagttttagt--aacatatttgaaaaccttgcttcaagatcaagatcccttt |
1767144 |
T |
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| Q |
121 |
caggctcttgtgctttagttaataatc |
147 |
Q |
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|| ||||||||| ||||||||||| |
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| T |
1767143 |
atggttcttgtgctcaagttaataatc |
1767117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 343
Target Start/End: Complemental strand, 25831726 - 25831682
Alignment:
| Q |
299 |
acatgacattgacacgttgacaccactaataatttgaaaaaatag |
343 |
Q |
| |
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|||| |||||||||||| ||||||||||||||||| | ||||||| |
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| T |
25831726 |
acataacattgacacgtagacaccactaataatttaagaaaatag |
25831682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 303 - 341
Target Start/End: Complemental strand, 5096169 - 5096131
Alignment:
| Q |
303 |
gacattgacacgttgacaccactaataatttgaaaaaat |
341 |
Q |
| |
|
||||||||||||| |||||| |||||||||||||||||| |
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|
| T |
5096169 |
gacattgacacgtcgacaccgctaataatttgaaaaaat |
5096131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 303 - 341
Target Start/End: Complemental strand, 12941008 - 12940970
Alignment:
| Q |
303 |
gacattgacacgttgacaccactaataatttgaaaaaat |
341 |
Q |
| |
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|||| |||||||||||||| ||||||||||||||||||| |
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| T |
12941008 |
gacactgacacgttgacacaactaataatttgaaaaaat |
12940970 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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