View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13382_low_30 (Length: 347)
Name: NF13382_low_30
Description: NF13382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13382_low_30 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 19 - 337
Target Start/End: Original strand, 35026553 - 35026871
Alignment:
| Q |
19 |
aacaagtccattttcaatatcttatttttggaatggaccaagacatagccaaggaaaaggattaactgtagatgatctcaagaaaccaccttcagggtac |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35026553 |
aacaagtccattttcaatatcttatttttggaatggaccaagacatagccaaggaaaaggattaactgtagatgatctcaagaaaccaccttcagggtac |
35026652 |
T |
|
| Q |
119 |
cctgatggttctatcaagctttatcaacatgaacttcaatttctgtcttcaacaaggaaacttgtcttcggaagtggtgtatttttatacgatcgtttgc |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35026653 |
cctgatggttctatcaagctttatcaacatgaacttcaatttctatcttcaacaaggaaacttgtcttcggaagtggtgtatttttatacgatcgtttgc |
35026752 |
T |
|
| Q |
219 |
atataggtacaagtttagctgatgcaattggtttcaaaggttgcaaagaacttgatgaaccatatgctgaatttcttggaaatttttatggaaaacctta |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35026753 |
atataggtacaagtttagctgatgcaattggtttcaaaggttgcaaagaacttgatgaaccatatgctgaatttcttggaaatttttatggaaaacctta |
35026852 |
T |
|
| Q |
319 |
tctactttctggtcctttg |
337 |
Q |
| |
|
||||||||| ||||||||| |
|
|
| T |
35026853 |
tctactttcaggtcctttg |
35026871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 91 - 334
Target Start/End: Original strand, 35033634 - 35033877
Alignment:
| Q |
91 |
tgatctcaagaaaccaccttcagggtaccctgatggttctatcaagctttatcaacatgaacttcaatttctgtcttcaacaaggaaacttgtcttcgga |
190 |
Q |
| |
|
|||| ||| ||||||||||||||||| ||||||| || |||||| ||||| |||| ||||||| ||| || |||||||||||||| ||| || ||| |
|
|
| T |
35033634 |
tgatatcatgaaaccaccttcagggttccctgattcttgcatcaagttttataaacacgaacttcgattcctagcttcaacaaggaaaattgcatttgga |
35033733 |
T |
|
| Q |
191 |
agtggtgtatttttatacgatcgtttgcatataggtacaagtttagctgatgcaattggtttcaaaggttgcaaagaacttgatgaaccatatgctgaat |
290 |
Q |
| |
|
|||||||| || |||| ||||||||||| || ||||||| | || |||||| ||||||||||||||||||| ||| |||||| |||||||||||| | |
|
|
| T |
35033734 |
agtggtgttttcttatttgatcgtttgcacattggtacaacctctgcagatgcagttggtttcaaaggttgcaatgaagttgatggaccatatgctgatt |
35033833 |
T |
|
| Q |
291 |
ttcttggaaatttttatggaaaaccttatctactttctggtcct |
334 |
Q |
| |
|
| ||| || | ||| |||||||||| ||| ||||| |||||| |
|
|
| T |
35033834 |
atattgaaactgtttttggaaaacctgttctgctttcaggtcct |
35033877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University