View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13382_low_31 (Length: 339)
Name: NF13382_low_31
Description: NF13382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13382_low_31 |
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Alignment Details
Target: chr3 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 18 - 332
Target Start/End: Complemental strand, 6281187 - 6280872
Alignment:
| Q |
18 |
acgtactcataaaatttgacccggaatctcatctcataaaattaaaagcaccaataataatttaacaacaaaaatcaaaaccatgtggtgtagaataatt |
117 |
Q |
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| T |
6281187 |
acgtactcataaaatttgacccggaatcgcatcttataaaattaaaagcaccaataataatttaacaacaaaaatcaaaaccatatggtgtagaataatt |
6281088 |
T |
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| Q |
118 |
tcatccataaaaggttaaaaactcaatcaac-aacatacaaagaaaagcaacaatgaattccactaacactgaagatgataataatgcatgtcttttagc |
216 |
Q |
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| T |
6281087 |
tcatccataaaaggttaaaaactcaagcaaccaacatacaaagaaaagaaacaatgaattccactaacactgaagatgataataatgcatgccttttagc |
6280988 |
T |
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| Q |
217 |
attacaactttcatttgaaccattgatttttaattcagtattgaaagctgcaattgaactaaacttgtttgagatcatatctaaagcaagtccacatggt |
316 |
Q |
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| T |
6280987 |
tttacaactttcatttgaaccattggtttttaattcagtattgaaagctgcaattgaactaaacttatttgagatcatatctaaagcaagtccacgtggt |
6280888 |
T |
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| Q |
317 |
gtttcagcatcctatg |
332 |
Q |
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| T |
6280887 |
gtttcagcatcctatg |
6280872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 332
Target Start/End: Complemental strand, 6285541 - 6285473
Alignment:
| Q |
264 |
ctgcaattgaactaaacttgtttgagatcatatctaaagcaagtccacatggtgtttcagcatcctatg |
332 |
Q |
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| T |
6285541 |
ctgcaattgaattaaacctatttgatattatatcaaaggcaaatccaccaggtgtttcagcatcctatg |
6285473 |
T |
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