View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13382_low_32 (Length: 328)

Name: NF13382_low_32
Description: NF13382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13382_low_32
NF13382_low_32
[»] chr6 (4 HSPs)
chr6 (178-317)||(8849463-8849602)
chr6 (19-65)||(31444761-31444807)
chr6 (21-60)||(27444122-27444161)
chr6 (19-61)||(33054181-33054223)
[»] chr3 (4 HSPs)
chr3 (19-65)||(11394008-11394054)
chr3 (19-60)||(19766009-19766050)
chr3 (19-61)||(52130783-52130825)
chr3 (19-55)||(46233981-46234017)
[»] chr4 (6 HSPs)
chr4 (19-67)||(38467729-38467777)
chr4 (19-63)||(41810163-41810207)
chr4 (19-65)||(32651288-32651334)
chr4 (35-67)||(48969137-48969169)
chr4 (19-53)||(3649873-3649907)
chr4 (21-55)||(26720237-26720271)
[»] scaffold0014 (1 HSPs)
scaffold0014 (21-62)||(32608-32649)
[»] chr2 (5 HSPs)
chr2 (19-60)||(7161811-7161852)
chr2 (19-65)||(997810-997856)
chr2 (19-56)||(4453777-4453814)
chr2 (19-56)||(9208569-9208606)
chr2 (19-65)||(3625169-3625217)
[»] chr8 (2 HSPs)
chr8 (19-55)||(35348991-35349027)
chr8 (19-55)||(44663701-44663737)
[»] chr1 (5 HSPs)
chr1 (19-65)||(17726023-17726068)
chr1 (19-56)||(32440667-32440704)
chr1 (21-55)||(31771394-31771428)
chr1 (19-56)||(22368217-22368254)
chr1 (19-55)||(1721556-1721592)
[»] chr7 (2 HSPs)
chr7 (19-60)||(16262700-16262741)
chr7 (19-55)||(21820192-21820228)
[»] scaffold0003 (2 HSPs)
scaffold0003 (21-60)||(43200-43239)
scaffold0003 (19-55)||(37026-37062)
[»] scaffold0152 (1 HSPs)
scaffold0152 (19-55)||(10195-10231)


Alignment Details
Target: chr6 (Bit Score: 128; Significance: 4e-66; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 178 - 317
Target Start/End: Original strand, 8849463 - 8849602
Alignment:
Q  178 ataattaataaatgtcataccgtgggtggatttgaggaaatcgtcacagagggatttggcgaaattgaactcgaacgtttcattctacgtaaccttctcg 277  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |||||||||    
T  8849463 ataattaataaatgtcataccgtgggtggatttgaggaaatcgtcacagagggatttggcgaaatcgaactcgaaggtttcattctacgttaccttctcg 8849562  T
Q  278 aactcaaagcaagaacgccacactcaggctaggtcttcat 317  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  8849563 aactcaaagcaagaacgccacactcaggctaggtcttcat 8849602  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 65
Target Start/End: Complemental strand, 31444807 - 31444761
Alignment:
Q  19 aattggagtgttaactaggattagaaataagttagattagattagat 65  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||    
T  31444807 aattggagtgttaactaggattaggaataagttagattagattagat 31444761  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 21 - 60
Target Start/End: Complemental strand, 27444161 - 27444122
Alignment:
Q  21 ttggagtgttaactaggattagaaataagttagattagat 60  Q
    ||||||||||||||| |||||| |||||||||||||||||    
T  27444161 ttggagtgttaactacgattaggaataagttagattagat 27444122  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 33054181 - 33054223
Alignment:
Q  19 aattggagtgttaactaggattagaaataagttagattagatt 61  Q
    ||||| |||||||| ||||||||| ||||||||||||||||||    
T  33054181 aattgtagtgttaattaggattaggaataagttagattagatt 33054223  T

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Target: chr3 (Bit Score: 47; Significance: 8e-18; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 19 - 65
Target Start/End: Complemental strand, 11394054 - 11394008
Alignment:
Q  19 aattggagtgttaactaggattagaaataagttagattagattagat 65  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  11394054 aattggagtgttaactaggattagaaataagttagattagattagat 11394008  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 19766050 - 19766009
Alignment:
Q  19 aattggagtgttaactaggattagaaataagttagattagat 60  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  19766050 aattggagtgttaactaggattagaaataagttagattagat 19766009  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 61
Target Start/End: Complemental strand, 52130825 - 52130783
Alignment:
Q  19 aattggagtgttaactaggattagaaataagttagattagatt 61  Q
    ||||||||||||| |||||||||||||||||||||| ||||||    
T  52130825 aattggagtgttacctaggattagaaataagttagactagatt 52130783  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 46233981 - 46234017
Alignment:
Q  19 aattggagtgttaactaggattagaaataagttagat 55  Q
    |||||||||||||||||||||||| ||||||||||||    
T  46233981 aattggagtgttaactaggattaggaataagttagat 46234017  T

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Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 38467729 - 38467777
Alignment:
Q  19 aattggagtgttaactaggattagaaataagttagattagattagatta 67  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||    
T  38467729 aattggagtgttaactaggattataaataagttagattagattagatta 38467777  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 41810207 - 41810163
Alignment:
Q  19 aattggagtgttaactaggattagaaataagttagattagattag 63  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  41810207 aattggagtgttaactaggattagaaataagttagattagattag 41810163  T

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Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 65
Target Start/End: Original strand, 32651288 - 32651334
Alignment:
Q  19 aattggagtgttaactaggattagaaataagttagattagattagat 65  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||    
T  32651288 aattggagtgttaactaggattaggaataagttagattagattagat 32651334  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 67
Target Start/End: Original strand, 48969137 - 48969169
Alignment:
Q  35 aggattagaaataagttagattagattagatta 67  Q
    |||||||||||||||||||||||||||||||||    
T  48969137 aggattagaaataagttagattagattagatta 48969169  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 53
Target Start/End: Complemental strand, 3649907 - 3649873
Alignment:
Q  19 aattggagtgttaactaggattagaaataagttag 53  Q
    |||||||||||||||||||||||| ||||||||||    
T  3649907 aattggagtgttaactaggattaggaataagttag 3649873  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 55
Target Start/End: Complemental strand, 26720271 - 26720237
Alignment:
Q  21 ttggagtgttaactaggattagaaataagttagat 55  Q
    |||||||||||||||||||||| ||||||||||||    
T  26720271 ttggagtgttaactaggattaggaataagttagat 26720237  T

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Target: scaffold0014 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 21 - 62
Target Start/End: Complemental strand, 32649 - 32608
Alignment:
Q  21 ttggagtgttaactaggattagaaataagttagattagatta 62  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  32649 ttggagtgttaactaggattagaaataagttagattagatta 32608  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 7161852 - 7161811
Alignment:
Q  19 aattggagtgttaactaggattagaaataagttagattagat 60  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  7161852 aattggagtgttaactaggattagaaataagttagattagat 7161811  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 19 - 65
Target Start/End: Complemental strand, 997856 - 997810
Alignment:
Q  19 aattggagtgttaactaggattagaaataagttagattagattagat 65  Q
    ||||| |||||||||||||||||| ||||||||||||||||||||||    
T  997856 aattgaagtgttaactaggattaggaataagttagattagattagat 997810  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 56
Target Start/End: Complemental strand, 4453814 - 4453777
Alignment:
Q  19 aattggagtgttaactaggattagaaataagttagatt 56  Q
    |||||||||||||||||||||||| |||||||||||||    
T  4453814 aattggagtgttaactaggattaggaataagttagatt 4453777  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 56
Target Start/End: Complemental strand, 9208606 - 9208569
Alignment:
Q  19 aattggagtgttaactaggattagaaataagttagatt 56  Q
    |||||||||||||||||||||||| |||||||||||||    
T  9208606 aattggagtgttaactaggattaggaataagttagatt 9208569  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 65
Target Start/End: Complemental strand, 3625217 - 3625169
Alignment:
Q  19 aattggagtgttaactaggattagaaataagttaga--ttagattagat 65  Q
    |||||||||||||| ||||||||| |||||||||||  |||||||||||    
T  3625217 aattggagtgttaattaggattaggaataagttagaagttagattagat 3625169  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 35349027 - 35348991
Alignment:
Q  19 aattggagtgttaactaggattagaaataagttagat 55  Q
    |||||||||||||||||||||||||||||||||||||    
T  35349027 aattggagtgttaactaggattagaaataagttagat 35348991  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 44663701 - 44663737
Alignment:
Q  19 aattggagtgttaactaggattagaaataagttagat 55  Q
    |||||||||||||||||||||||| ||||||||||||    
T  44663701 aattggagtgttaactaggattaggaataagttagat 44663737  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 65
Target Start/End: Complemental strand, 17726068 - 17726023
Alignment:
Q  19 aattggagtgttaactaggattagaaataagttagattagattagat 65  Q
    |||||||||||||||||||||||| ||||| ||||||||||||||||    
T  17726068 aattggagtgttaactaggattaggaataa-ttagattagattagat 17726023  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 56
Target Start/End: Original strand, 32440667 - 32440704
Alignment:
Q  19 aattggagtgttaactaggattagaaataagttagatt 56  Q
    |||||||||||||||||||||||| |||||||||||||    
T  32440667 aattggagtgttaactaggattaggaataagttagatt 32440704  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 55
Target Start/End: Original strand, 31771394 - 31771428
Alignment:
Q  21 ttggagtgttaactaggattagaaataagttagat 55  Q
    |||||||||||||||||||||| ||||||||||||    
T  31771394 ttggagtgttaactaggattaggaataagttagat 31771428  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 56
Target Start/End: Original strand, 22368217 - 22368254
Alignment:
Q  19 aattggagtgttaactaggattagaaataagttagatt 56  Q
    ||||| |||||||||||||||||| |||||||||||||    
T  22368217 aattgaagtgttaactaggattaggaataagttagatt 22368254  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 1721592 - 1721556
Alignment:
Q  19 aattggagtgttaactaggattagaaataagttagat 55  Q
    |||||||||||||| ||||||||| ||||||||||||    
T  1721592 aattggagtgttaattaggattaggaataagttagat 1721556  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 16262700 - 16262741
Alignment:
Q  19 aattggagtgttaactaggattagaaataagttagattagat 60  Q
    ||||| |||||||||||||||||| |||||||||||||||||    
T  16262700 aattgaagtgttaactaggattaggaataagttagattagat 16262741  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 21820192 - 21820228
Alignment:
Q  19 aattggagtgttaactaggattagaaataagttagat 55  Q
    |||||||||||||| ||||||||| ||||||||||||    
T  21820192 aattggagtgttaattaggattaggaataagttagat 21820228  T

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Target: scaffold0003 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 21 - 60
Target Start/End: Original strand, 43200 - 43239
Alignment:
Q  21 ttggagtgttaactaggattagaaataagttagattagat 60  Q
    ||||||||||||||| |||||| |||||||||||||||||    
T  43200 ttggagtgttaactacgattaggaataagttagattagat 43239  T

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Target: scaffold0003; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 37026 - 37062
Alignment:
Q  19 aattggagtgttaactaggattagaaataagttagat 55  Q
    |||||||||||||| ||||||||| ||||||||||||    
T  37026 aattggagtgttaattaggattaggaataagttagat 37062  T

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Target: scaffold0152 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 10231 - 10195
Alignment:
Q  19 aattggagtgttaactaggattagaaataagttagat 55  Q
    |||||||||||||||||||||| | ||||||||||||    
T  10231 aattggagtgttaactaggattgggaataagttagat 10195  T

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