View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13382_low_34 (Length: 324)
Name: NF13382_low_34
Description: NF13382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13382_low_34 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 324
Target Start/End: Complemental strand, 30524965 - 30524630
Alignment:
| Q |
1 |
cagaaacatccgtaatacggaactcgtgtgtactgtattcatgtattatccatatagtaatgataatgacatgaaaatgaaaatgaaaat---------- |
90 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
30524965 |
cagaaacatccgtaatacggaactcgtgtgtactgtattcatgtattatccatatagtaataataatgacatgaaaatgaaaatgaaaatgaaaatgaaa |
30524866 |
T |
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| Q |
91 |
--aatagtactatacacgctgttgagacacgtgcttagtgtttctattaattttcttcaaattgcacttaatttaatccaaaatcataaatgagctgtag |
188 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30524865 |
ataatagtactatacacgctgttgagacacgtgcttagtgtttctattaattttcttcaaattgcacttaatttaatccaaaatcataaatgagctgtag |
30524766 |
T |
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| Q |
189 |
agagagtggaaatctagctggtagtagaaacaacaaactctcctctccttctcaccctcttcctacttcactattttacttcttaaatcctataaataca |
288 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30524765 |
agagagtggaaatctagctggtagtagaaacaacaaactctcctctccttctcaccctcttcctacttcactattttacttcttaaatcctataaataca |
30524666 |
T |
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| Q |
289 |
tcaaatcttcatcannnnnnnctcactcatcttatt |
324 |
Q |
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|||||||||||||| ||||||||||||||| |
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| T |
30524665 |
tcaaatcttcatcatttttttctcactcatcttatt |
30524630 |
T |
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