View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13382_low_36 (Length: 306)
Name: NF13382_low_36
Description: NF13382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13382_low_36 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 1720615 - 1720920
Alignment:
| Q |
1 |
aggacgcgtatggattctattgggaatgcaaaattattagtcagtagttttttcatgttaacaacatcattaacggttcccttgagcatgtaccgtcttc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1720615 |
aggacgcgtatggattctattgggaatgcaaaattattagtcagtagttttttcatgttaacaacatcattaacggttcccttgagcatgtaccgtcttc |
1720714 |
T |
|
| Q |
101 |
ttctgtaagtaactccacatagaaccgcgcgtttgttaccgattgtagttgtagacaacaacaaagaggaatggcttgatgcatttttactagcattttg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1720715 |
ttctgtaagtaactccacatagaaccgcgcgtttgttaccgattgtagttgtagacaacaacaaagaggaatggcttgatgcatttttactagcattttg |
1720814 |
T |
|
| Q |
201 |
ttgtcgatcttggttgaagaatttggctcttaaactattttctctgaattgtttataacctgaaattgatttactaacaccttcgcatttgttgcaacgg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1720815 |
ttgtcgatcttggttgaagaatttggctcttaaactattttctctgaattgtttataacctgaaattgatttactaacaccttcgcatttgttgcaacgg |
1720914 |
T |
|
| Q |
301 |
tacata |
306 |
Q |
| |
|
|||||| |
|
|
| T |
1720915 |
tacata |
1720920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 22 - 240
Target Start/End: Complemental strand, 18372915 - 18372697
Alignment:
| Q |
22 |
gggaatgcaaaattattagtcagtagttttttcatgttaacaacatcattaacggttcccttgagcatgtaccgtcttcttctgtaagtaactccacata |
121 |
Q |
| |
|
|||||||||||||| ||| | ||| |||| ||||||||| |||||||||| |||||| |||||| |||| | ||||| ||| |||| |||||||||| |
|
|
| T |
18372915 |
gggaatgcaaaattgttaaccgttagattttccatgttaacgacatcattaatggttcc-ttgagcttgtaacatcttcg-ctgcaagttactccacata |
18372818 |
T |
|
| Q |
122 |
gaaccgcgcgtttgttaccgattgtagttgtagacaacaacaaagaggaatggcttgatgcatttttac--tagcattttgttgtcgatcttggttgaag |
219 |
Q |
| |
|
||||| | | ||||||| | | | ||||||||||||||| | |||||||||| |||||||||| | | ||||| | ||| || ||||||||||||| |
|
|
| T |
18372817 |
gaaccatgtgcttgttacgggtgattgttgtagacaacaacgacgaggaatggcctgatgcatttgtgctatagcactgtgtagttgatcttggttgaac |
18372718 |
T |
|
| Q |
220 |
aatttggctcttaaactattt |
240 |
Q |
| |
|
|||| ||| |||||||||| |
|
|
| T |
18372717 |
aattcagcttctaaactattt |
18372697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University