View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13382_low_37 (Length: 304)
Name: NF13382_low_37
Description: NF13382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13382_low_37 |
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| [»] scaffold0464 (1 HSPs) |
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| [»] scaffold0479 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 19 - 284
Target Start/End: Complemental strand, 32576571 - 32576296
Alignment:
| Q |
19 |
ggtggagatgatgatgagtgtttgagttagctcaactcaagggaagccaacttggtggtttatatttgctttgggagtctgtgtcatctcaataaaggag |
118 |
Q |
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| T |
32576571 |
ggtggagatgatgattagtgtttgagttggctcaactcaaacgaagccaacttggtggtttatatttgctttggaagtccgtgtcatctcaat-aaggag |
32576473 |
T |
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| Q |
119 |
cagtatttcaagacaggaagtggggtgcctgaaaaggatttcttcgg-----------gtatggtaaagcatcttgtgtgcagtagagagtttcaaattc |
207 |
Q |
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| T |
32576472 |
caatatttgatgacagaaggtggggtgcctggaaaggacttcttcgggcggttcccgtgtatggtaaagcattttgcgtgtagtagagggtttcaaattc |
32576373 |
T |
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| Q |
208 |
aatagggatggtggtgtggggataggtgccacagaggttgatcttgaaataccctgcaattgttgttggagtgccca |
284 |
Q |
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| T |
32576372 |
agtagggatggtggtgagaggctaggggccacataggttgatcttgaaacaccctgcaattgtggttagagtgccca |
32576296 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 240 - 282
Target Start/End: Complemental strand, 12733098 - 12733056
Alignment:
| Q |
240 |
agaggttgatcttgaaataccctgcaattgttgttggagtgcc |
282 |
Q |
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| T |
12733098 |
agaggttgatcttgaaataccctgcaattgtggttggagtgcc |
12733056 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 25 - 126
Target Start/End: Complemental strand, 19885489 - 19885389
Alignment:
| Q |
25 |
gatgatgatgagtgtttgagttagctcaactcaagggaagccaacttggtggtttatatttgctttgggagtctgtgtcatctcaataaaggagcagtat |
124 |
Q |
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| T |
19885489 |
gatgatgatgagtgtttgagttggctcaactcgagggaagccaattcggtggtttatatttgctttgtgaatctctgttgtctcaat-aaggagcagtat |
19885391 |
T |
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| Q |
125 |
tt |
126 |
Q |
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|| |
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| T |
19885390 |
tt |
19885389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 277
Target Start/End: Complemental strand, 19885290 - 19885245
Alignment:
| Q |
232 |
ggtgccacagaggttgatcttgaaataccctgcaattgttgttgga |
277 |
Q |
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| T |
19885290 |
ggtgccacagaggttgatcttgaaacatcctgtaattgtggttgga |
19885245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0464 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0464
Description:
Target: scaffold0464; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 240 - 282
Target Start/End: Original strand, 9661 - 9703
Alignment:
| Q |
240 |
agaggttgatcttgaaataccctgcaattgttgttggagtgcc |
282 |
Q |
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| T |
9661 |
agaggttgatcttgaaataccctgcaattgtggttggagtgcc |
9703 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 91
Target Start/End: Original strand, 14751454 - 14751520
Alignment:
| Q |
25 |
gatgatgatgagtgtttgagttagctcaactcaagggaagccaacttggtggtttatatttgctttg |
91 |
Q |
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|||||||||||||| |||| || |||||||| ||||||||||| | || ||||||||||||||||| |
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| T |
14751454 |
gatgatgatgagtgcttgatttgactcaactcgagggaagccaattcggaggtttatatttgctttg |
14751520 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0479 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0479
Description:
Target: scaffold0479; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 270
Target Start/End: Original strand, 3699 - 3729
Alignment:
| Q |
240 |
agaggttgatcttgaaataccctgcaattgt |
270 |
Q |
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| T |
3699 |
agaggttgatcttgaaataccctgcaattgt |
3729 |
T |
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