View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13382_low_4 (Length: 701)
Name: NF13382_low_4
Description: NF13382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13382_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 575; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 575; E-Value: 0
Query Start/End: Original strand, 19 - 686
Target Start/End: Original strand, 5606883 - 5607542
Alignment:
| Q |
19 |
attctcgcatgaattataaccattttcaaaccatataatttgatccatttcgatgcagtctctgcaattcttatgaggatgcttcattgctgttagacac |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
5606883 |
attctcgcatgaattataaccattttcaaaccatataatttgatccattttgatgcagtctctgcaattcatatgaggatgcttcattgctgttagacac |
5606982 |
T |
|
| Q |
119 |
gctccgcttgtttgataatcaagtgtatggtgtcaccaatggactgttaatgggttacagagaacaagtatggctaagtgctgagactctgttcgatgaa |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5606983 |
gctccgcttgtttgataatcaagtgtatggtgtcaccaatggactgttaatgggttacagagaacaagtatggctaagtgctgagactctgttcgatgaa |
5607082 |
T |
|
| Q |
219 |
ctcatgcatatggatccttcaacttcgtctgccttttataacgccctcactgatatgctgtggcactttggtcaggtaaaaagtccagccatcagaaatg |
318 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5607083 |
ctcatgtgtatggatccttcaacttcgtctgccttttataacgccctcactgatatgctgtggcactttggtcaggtaaaaagtccagccatcagaaatg |
5607182 |
T |
|
| Q |
319 |
tgtcagttttgcttctgttaattttctaatttgtttatctaacattctgattttcnnnnnnnnnnnnataataaaatttgttatcgacaccagagacgcg |
418 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |||| ||||| |
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| T |
5607183 |
tatcagttttgcttctgttaattttctaatttgtttatctaacattctgattttc---tgtttttttataataaaatttgttattgacatcagaaacgcg |
5607279 |
T |
|
| Q |
419 |
gagctgaaatggttgtaattgaagggagacgccgaaatgtgtggaaaggcgaatggtcaatttcttgcttggatctgcatctgatgtcttgtggtgctgc |
518 |
Q |
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| T |
5607280 |
gagctgaaatggttgtaattgaagggagacgccgaaatgtgtggaaaggcgaatggtcaatttcttgcttggatctgcatctgatgtcttgtggtgctgc |
5607379 |
T |
|
| Q |
519 |
ttgtgcaatggttcattcatggttgctcagtttgcatagttctctttttcaaggcattcaactgcctaagtttgtcaagtatggatctttactacctatg |
618 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5607380 |
ttgtgcaatggttcattcatggttgctcagtttgcatagttctctttttcaaggcattcaactgcctaagtttgtcaagtatggatctttactacctatg |
5607479 |
T |
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| Q |
619 |
aattttttattgttttcatttaattggattaataagataagatgattaaattgttgatcacaatttca |
686 |
Q |
| |
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| T |
5607480 |
aattttttattgttttcatttaattggatta-----ataagatgattaaattgttgatcacaatttca |
5607542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 409 - 608
Target Start/End: Complemental strand, 5588694 - 5588495
Alignment:
| Q |
409 |
cagagacgcggagctgaaatggttgtaattgaagggagacgccgaaatgtgtggaaaggcgaatggtcaatttcttgcttggatctgcatctgatgtctt |
508 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |
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| T |
5588694 |
cagagacgcggagctgaaatggttgtaaccgaagggagacgccgaaatgtgtggaaaggtgaatggtcaatttcttgtctggatctgcatctgatgtctt |
5588595 |
T |
|
| Q |
509 |
gtggtgctgcttgtgcaatggttcattcatggttgctcagtttgcatagttctctttttcaaggcattcaactgcctaagtttgtcaagtatggatcttt |
608 |
Q |
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| T |
5588594 |
gtggtgctgcttgtgcaatggttcattcatggttgctcaatatgcatagtactttatttgaaggctctgaactgcctaagattgtgacgtatggatcttt |
5588495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 409 - 608
Target Start/End: Complemental strand, 5593655 - 5593456
Alignment:
| Q |
409 |
cagagacgcggagctgaaatggttgtaattgaagggagacgccgaaatgtgtggaaaggcgaatggtcaatttcttgcttggatctgcatctgatgtctt |
508 |
Q |
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| T |
5593655 |
cagagacgcggagctgaaatggttgtaaccgaagggagacgccgaaatgtgtggaaaggtgaatggtcaatttcttgtctggatctgcatctgatgtctt |
5593556 |
T |
|
| Q |
509 |
gtggtgctgcttgtgcaatggttcattcatggttgctcagtttgcatagttctctttttcaaggcattcaactgcctaagtttgtcaagtatggatcttt |
608 |
Q |
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||||||||||||||||||||||||||||||||||||||| | |||||||| || | ||| ||||| | ||||||||||| |||| | |||||||||||| |
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| T |
5593555 |
gtggtgctgcttgtgcaatggttcattcatggttgctcaatatgcatagtactttatttgaaggctctgaactgcctaagattgtgacgtatggatcttt |
5593456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 58 - 338
Target Start/End: Complemental strand, 5589031 - 5588753
Alignment:
| Q |
58 |
ttgatccatttcgatgcagtctctgcaattcttatgaggatgcttcattgctgttagacacgctccgcttgtttgataatcaagtgtatggtgtcaccaa |
157 |
Q |
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||||||||||| ||||||||| |||||||| | |||||| |||||| ||||||||| | || ||| |||||||||| || || |||||||| || | |
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| T |
5589031 |
ttgatccattttgatgcagtcgttgcaattcatttgaggacgcttcaatgctgttaggtgcacttcgcctgtttgataaccaggtctatggtgtaacgca |
5588932 |
T |
|
| Q |
158 |
tggactgttaatgggttacagagaacaagtatggctaagtgctgagactctgttcgatgaactcatgcatatggatccttcaacttcgtctgccttttat |
257 |
Q |
| |
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|||| |||| |||||||| ||||||||||||||| | ||| | |||||||| |||||| | | || ||||||| |||||||| | || ||||| ||| |
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| T |
5588931 |
tggattgttgatgggttatagagaacaagtatggtttcaggctcaaactctgtttgatgaaatgaggcgtatggattcttcaactgcatccgccttctat |
5588832 |
T |
|
| Q |
258 |
aacgccctcactgatatgctgtggcactttggtcaggtaaaaagtccagccatcagaaatgtgtcagttttgcttctgtta |
338 |
Q |
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||||||||||| |||||||||||||| ||||||||||| ||||||||||||| |||||| || |||||||| ||||||| |
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| T |
5588831 |
aacgccctcacagatatgctgtggcagtttggtcaggt--aaagtccagccattagaaatttgctagttttgcatctgtta |
5588753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 58 - 338
Target Start/End: Complemental strand, 5593992 - 5593714
Alignment:
| Q |
58 |
ttgatccatttcgatgcagtctctgcaattcttatgaggatgcttcattgctgttagacacgctccgcttgtttgataatcaagtgtatggtgtcaccaa |
157 |
Q |
| |
|
||||||||||| ||||||||| |||||||| | |||||| |||||| ||||||||| | || ||| |||||||||| || || |||||||| || | |
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| T |
5593992 |
ttgatccattttgatgcagtcgttgcaattcatttgaggacgcttcaatgctgttaggtgcacttcgcctgtttgataaccaggtctatggtgtaacgca |
5593893 |
T |
|
| Q |
158 |
tggactgttaatgggttacagagaacaagtatggctaagtgctgagactctgttcgatgaactcatgcatatggatccttcaacttcgtctgccttttat |
257 |
Q |
| |
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|||| |||| |||||||| ||||||||||||||| | ||| | |||||||| |||||| | | || ||||||| |||||||| | || ||||| ||| |
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| T |
5593892 |
tggattgttgatgggttatagagaacaagtatggtttcaggctcaaactctgtttgatgaaatgaggcgtatggattcttcaactgcatccgccttctat |
5593793 |
T |
|
| Q |
258 |
aacgccctcactgatatgctgtggcactttggtcaggtaaaaagtccagccatcagaaatgtgtcagttttgcttctgtta |
338 |
Q |
| |
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||||||||||| |||||||||||||| ||||||||||| ||||||||||||| |||||| || |||||||| ||||||| |
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| T |
5593792 |
aacgccctcacagatatgctgtggcagtttggtcaggt--aaagtccagccattagaaatttgctagttttgcatctgtta |
5593714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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