View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13382_low_41 (Length: 259)

Name: NF13382_low_41
Description: NF13382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13382_low_41
NF13382_low_41
[»] chr1 (3 HSPs)
chr1 (1-248)||(38710060-38710309)
chr1 (1-134)||(4397313-4397443)
chr1 (61-134)||(4391776-4391849)
[»] chr5 (11 HSPs)
chr5 (1-130)||(35847206-35847335)
chr5 (1-134)||(17218823-17218956)
chr5 (1-134)||(25362381-25362514)
chr5 (1-134)||(2707169-2707303)
chr5 (3-134)||(39368972-39369102)
chr5 (6-134)||(29685939-29686068)
chr5 (1-134)||(42742178-42742309)
chr5 (1-79)||(40377703-40377781)
chr5 (1-134)||(2334583-2334718)
chr5 (56-106)||(3204445-3204495)
chr5 (64-100)||(1223089-1223125)
[»] chr8 (4 HSPs)
chr8 (1-134)||(38388026-38388159)
chr8 (1-134)||(46066-46199)
chr8 (2-69)||(22915941-22916008)
chr8 (1-89)||(4489610-4489698)
[»] chr3 (6 HSPs)
chr3 (1-134)||(16285174-16285306)
chr3 (4-134)||(17323997-17324127)
chr3 (1-134)||(23087619-23087753)
chr3 (5-134)||(45181706-45181835)
chr3 (46-134)||(35571416-35571504)
chr3 (2-134)||(29016588-29016720)
[»] chr2 (2 HSPs)
chr2 (1-134)||(37128763-37128896)
chr2 (1-119)||(41958340-41958458)
[»] chr7 (2 HSPs)
chr7 (1-130)||(2570424-2570553)
chr7 (1-134)||(6003482-6003615)
[»] chr4 (4 HSPs)
chr4 (1-134)||(26500115-26500248)
chr4 (54-134)||(6760853-6760933)
chr4 (2-134)||(1799255-1799395)
chr4 (1-38)||(10388669-10388706)


Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 38710060 - 38710309
Alignment:
Q  1 cttgagtggtggtcgaagctgaacgcttgaagcaaaatcaccattgggtgccaaattgatcactgttggcggtgttggttctttgaggaactgttgttag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  38710060 cttgagtggtggtcgaagctgaacgcttgaagcaaaatcaccattgggtgccaaattgatcactgttggcggtgttggttctttgaggaactgttattag 38710159  T
Q  101 gggatttgacattttgagggtgctggtggtttttggtgnnnnnnnnncc--tctctttttggtgtaatacttgaacattgtatattctatagaagattca 198  Q
    |||||||| |||||||||||||||||||||||||||||          |  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  38710160 gggatttggcattttgagggtgctggtggtttttggtgttttttttttctttctctttttggtgtaatacttgaacattgtatattctatagaagattca 38710259  T
Q  199 aatgatgtaaccactctttcaattgatgagcttcaaattgtagattgatg 248  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38710260 aatgatgtaaccactctttcaattgatgagcttcaaattgtagattgatg 38710309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 4397443 - 4397313
Alignment:
Q  1 cttgagtggtggtcgaagctgaacgcttgaagcaaaatcaccattgggtgccaaattgatcactgttggcggtgttggttctttgaggaactgttgttag 100  Q
    ||||||||||||||||||||||||| ||||||||||||||| || ||||||| ||||||||| ||||||||||||||||||||||||||   |||||||     
T  4397443 cttgagtggtggtcgaagctgaacgtttgaagcaaaatcactatcgggtgcctaattgatcattgttggcggtgttggttctttgagga---gttgttat 4397347  T
Q  101 gggatttgacattttgagggtgctggtggttttt 134  Q
    |||||| | |||||||||||||||||||||||||    
T  4397346 gggattcggcattttgagggtgctggtggttttt 4397313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 61 - 134
Target Start/End: Original strand, 4391776 - 4391849
Alignment:
Q  61 cactgttggcggtgttggttctttgaggaactgttgttaggggatttgacattttgagggtgctggtggttttt 134  Q
    ||||||||| ||||||||||||||||||| || ||||||||||||| ||||||||||||| |||||| ||||||    
T  4391776 cactgttggtggtgttggttctttgaggagcttttgttaggggattcgacattttgagggggctggttgttttt 4391849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 94; Significance: 6e-46; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 35847206 - 35847335
Alignment:
Q  1 cttgagtggtggtcgaagctgaacgcttgaagcaaaatcaccattgggtgccaaattgatcactgttggcggtgttggttctttgaggaactgttgttag 100  Q
    ||||||||||||||||||||||||| ||||||||||||||| || ||||||| ||||||| | ||||||||||||||||||||||||||  |||||||||    
T  35847206 cttgagtggtggtcgaagctgaacgtttgaagcaaaatcactatcgggtgcctaattgataaatgttggcggtgttggttctttgaggagttgttgttag 35847305  T
Q  101 gggatttgacattttgagggtgctggtggt 130  Q
    |||||| |||||||||||||||||||||||    
T  35847306 gggattcgacattttgagggtgctggtggt 35847335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 17218823 - 17218956
Alignment:
Q  1 cttgagtggtggtcgaagctgaacgcttgaagcaaaatcaccattgggtgccaaattgatcactgttggcggtgttggttctttgaggaactgttgttag 100  Q
    ||||||||||||||||||||||||  ||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||| ||  |||||||||    
T  17218823 cttgagtggtggtcgaagctgaacttttgaagcaaaatcactattgggtgcctaattgttcactgttggcggtgttggttctttgatgagttgttgttag 17218922  T
Q  101 gggatttgacattttgagggtgctggtggttttt 134  Q
    || ||| | |||||||||||||||||||||||||    
T  17218923 ggtattcggcattttgagggtgctggtggttttt 17218956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 25362381 - 25362514
Alignment:
Q  1 cttgagtggtggtcgaagctgaacgcttgaagcaaaatcaccattgggtgccaaattgatcactgttggcggtgttggttctttgaggaactgttgttag 100  Q
    ||||||||||| | ||||||||||| ||||||||||||| | || ||||||| ||||||||||||||||||||||| ||||||||||||  |||||||||    
T  25362381 cttgagtggtgattgaagctgaacgtttgaagcaaaatctctatcgggtgcctaattgatcactgttggcggtgttagttctttgaggagttgttgttag 25362480  T
Q  101 gggatttgacattttgagggtgctggtggttttt 134  Q
    ||||||  |||||||||||||| |||||||||||    
T  25362481 gggattcaacattttgagggtgatggtggttttt 25362514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 2707169 - 2707303
Alignment:
Q  1 cttgagtggtggtcgaagctgaacgcttgaagcaaaatcaccattgggtgccaaattgatcactgttggcggtgttggttctttgaggaactgttgttag 100  Q
    |||||||||||||| |||||||||| ||||||||||||||  | |||||||  ||||||| |||||||| |||||||||| | |||||| || |||||||    
T  2707169 cttgagtggtggtcaaagctgaacgtttgaagcaaaatcattactgggtgcttaattgattactgttggtggtgttggttatctgaggagctattgttag 2707268  T
Q  101 gggatttgacat-tttgagggtgctggtggttttt 134  Q
    ||| || ||||| ||||||||||||||||||||||    
T  2707269 gggtttcgacatgtttgagggtgctggtggttttt 2707303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 3 - 134
Target Start/End: Original strand, 39368972 - 39369102
Alignment:
Q  3 tgagtggtggtcgaagctgaacgcttgaagcaaaatcaccattgggtgccaaattgatcactgttggcggtgttggttctttgaggaactgttgttaggg 102  Q
    ||||||||||||||||||||||| |||||||||  ||||  | |||||||  ||| ||||||||||||| ||||||||||| ||||| ||||||||||||    
T  39368972 tgagtggtggtcgaagctgaacgtttgaagcaatgtcact-tcgggtgccttatttatcactgttggcgatgttggttcttggaggagctgttgttaggg 39369070  T
Q  103 gatttgacattttgagggtgctggtggttttt 134  Q
    | |||| ||||||||| |||||  ||||||||    
T  39369071 gttttggcattttgagagtgctaatggttttt 39369102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 6 - 134
Target Start/End: Original strand, 29685939 - 29686068
Alignment:
Q  6 gtggtggtcgaagctgaacgcttgaagcaaaatcaccattgggtgccaaattgatcactgttggcggtgttggttctttgaggaactgttgttaggggat 105  Q
    |||||||| ||||||||||| |||||||||| |||  ||  |||||  |||||| ||||||||  |||||||||||||||||||  |||||||||||| |    
T  29685939 gtggtggtggaagctgaacgtttgaagcaaagtcattatcaggtgcttaattgaccactgttgatggtgttggttctttgaggagttgttgttaggggtt 29686038  T
Q  106 ttgacat-tttgagggtgctggtggttttt 134  Q
    | ||||| ||||||| ||||||||||||||    
T  29686039 tcgacatgtttgaggatgctggtggttttt 29686068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 42742309 - 42742178
Alignment:
Q  1 cttgagtggtggtcgaagctgaacgcttgaagcaaaatcaccattgggtgccaaattgatcactgttggcggtgttggttctttgaggaactgttgttag 100  Q
    |||||||||||||| ||| || ||| |||||| ||||||||  |  |||||| ||||| ||||||||  |||||||||||||||||||| ||||||||||    
T  42742309 cttgagtggtggtcaaagttgtacgtttgaaggaaaatcact-tcaggtgcctaattg-tcactgttcacggtgttggttctttgaggagctgttgttag 42742212  T
Q  101 gggatttgacattttgagggtgctggtggttttt 134  Q
    ||| ||   |||||||||||||||||||||||||    
T  42742211 gggtttcagcattttgagggtgctggtggttttt 42742178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 40377703 - 40377781
Alignment:
Q  1 cttgagtggtggtcgaagctgaacgcttgaagcaaaatcaccattgggtgccaaattgatcactgttggcggtgttggt 79  Q
    ||||||||||||| ||| ||||||| |||||| |||||||| |||| |  || ||||||||||||||||||||||||||    
T  40377703 cttgagtggtggtggaacctgaacgtttgaagtaaaatcactattgaggacctaattgatcactgttggcggtgttggt 40377781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 2334718 - 2334583
Alignment:
Q  1 cttgagtggtggtcgaagctgaacgcttgaagcaaaatcaccattgggtgccaaattgatcactg-ttggcggtgttggtt-ctttgaggaactgttgtt 98  Q
    |||||||||||||||||||||  || | ||||||  ||||| || || || | |||||||||||  ||||||||||||||| ||||||||| ||  ||||    
T  2334718 cttgagtggtggtcgaagctgtgcgttggaagcattatcactatcggatgtctaattgatcactcattggcggtgttggtttctttgaggagctactgtt 2334619  T
Q  99 aggggatttgacattttgagggtgctggtggttttt 134  Q
    ||||| ||   ||||||||||||| |||||||||||    
T  2334618 aggggtttcagcattttgagggtgttggtggttttt 2334583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 56 - 106
Target Start/End: Original strand, 3204445 - 3204495
Alignment:
Q  56 ttgatcactgttggcggtgttggttctttgaggaactgttgttaggggatt 106  Q
    ||||||||| ||| ||||||||||||||||||||  |||||||||||||||    
T  3204445 ttgatcactattgacggtgttggttctttgaggagttgttgttaggggatt 3204495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 100
Target Start/End: Original strand, 1223089 - 1223125
Alignment:
Q  64 tgttggcggtgttggttctttgaggaactgttgttag 100  Q
    |||||||||||||||||||||||||| || |||||||    
T  1223089 tgttggcggtgttggttctttgaggagctattgttag 1223125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 86; Significance: 3e-41; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 38388026 - 38388159
Alignment:
Q  1 cttgagtggtggtcgaagctgaacgcttgaagcaaaatcaccattgggtgccaaattgatcactgttggcggtgttggttctttgaggaactgttgttag 100  Q
    ||||||||||||||||||||||||| ||||||||||||||| || ||||||| |||||||||||||||  ||||||||||||| |||||  |||||||||    
T  38388026 cttgagtggtggtcgaagctgaacgtttgaagcaaaatcactatcgggtgcctaattgatcactgttgatggtgttggttcttcgaggagttgttgttag 38388125  T
Q  101 gggatttgacattttgagggtgctggtggttttt 134  Q
    ||| || | |||||||||||||||||||||||||    
T  38388126 gggtttcggcattttgagggtgctggtggttttt 38388159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 46199 - 46066
Alignment:
Q  1 cttgagtggtggtcgaagctgaacgcttgaagcaaaatcaccattgggtgccaaattgatcactgttggcggtgttggttctttgaggaactgttgttag 100  Q
    |||||||||||||| ||| |||||| ||||||||||||||| ||  || | | ||||||||| ||||| | ||||||||||||||||||  |||||||||    
T  46199 cttgagtggtggtcaaagttgaacgtttgaagcaaaatcactatcaggcgtcgaattgatcattgttgacagtgttggttctttgaggagttgttgttag 46100  T
Q  101 gggatttgacattttgagggtgctggtggttttt 134  Q
    ||||||   |||||| |||||||| |||||||||    
T  46099 gggattcatcattttcagggtgctagtggttttt 46066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 2 - 69
Target Start/End: Original strand, 22915941 - 22916008
Alignment:
Q  2 ttgagtggtggtcgaagctgaacgcttgaagcaaaatcaccattgggtgccaaattgatcactgttgg 69  Q
    ||||||||| |||||||||||||| |||||||||| |||| || || |||||||||||||| ||||||    
T  22915941 ttgagtggtagtcgaagctgaacgtttgaagcaaattcactatcggatgccaaattgatcagtgttgg 22916008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 4489698 - 4489610
Alignment:
Q  1 cttgagtggtggtcgaagctgaacgcttgaagcaaaatcaccattgggtgccaaattgatcactgttggcggtgttggttctttgagga 89  Q
    ||||||||||||| |||||| |||| ||||||||||||||  || | ||||  |||| | |||| |||| |||||||||||||||||||    
T  4489698 cttgagtggtggtagaagctaaacgtttgaagcaaaatcattatcgagtgcttaatttaacactattggtggtgttggttctttgagga 4489610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 86; Significance: 3e-41; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 16285174 - 16285306
Alignment:
Q  1 cttgagtggtggtcgaagctgaacgcttgaagcaaaatcaccattgggtgccaaattgatcactgttggcggtgttggttctttgaggaactgttgttag 100  Q
    |||||||||||||| |||||||||  ||||||||||||||| || ||||||| |||| |||||||||||||||||||||||||| |||||||||||||||    
T  16285174 cttgagtggtggtcaaagctgaacatttgaagcaaaatcactatcgggtgcctaattaatcactgttggcggtgttggttctttaaggaactgttgttag 16285273  T
Q  101 gggatttgacattttgagggtgctggtggttttt 134  Q
    ||| |||| ||||||||||||| |||||||||||    
T  16285274 ggg-tttggcattttgagggtgatggtggttttt 16285306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 4 - 134
Target Start/End: Complemental strand, 17324127 - 17323997
Alignment:
Q  4 gagtggtggtcgaagctgaacgcttgaagcaaaatcaccattgggtgccaaattgatcactgttggcggtgttggttctttgaggaactgttgttagggg 103  Q
    |||||||||||||||||||||| ||||||||||||||| ||  |||| | ||||||||||||||||||||||||||||||||||||  |||||| |||||    
T  17324127 gagtggtggtcgaagctgaacgtttgaagcaaaatcactatcaggtgtcgaattgatcactgttggcggtgttggttctttgaggagttgttgtcagggg 17324028  T
Q  104 atttgacattttgagggtgctggtggttttt 134  Q
    |||   |||||| |||||||| |||||||||    
T  17324027 attcatcattttcagggtgctagtggttttt 17323997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 23087619 - 23087753
Alignment:
Q  1 cttgagtggtggtcgaagctgaacgcttgaagcaaaatcaccattgggtgccaaattgatcactgttggcggtgttggttctttgaggaactgttgtta- 99  Q
    |||||||| | |||||||||||||| |||||| |||||||| || || |||| ||||||||| ||||||||||| ||||||||||| || |||||||||     
T  23087619 cttgagtgatagtcgaagctgaacgtttgaagtaaaatcactatcggatgcctaattgatcattgttggcggtgatggttctttgatgagctgttgttat 23087718  T
Q  100 ggggatttgacattttgagggtgctggtggttttt 134  Q
    ||||||| | |||||| ||||||||||||||||||    
T  23087719 ggggattcggcattttaagggtgctggtggttttt 23087753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 5 - 134
Target Start/End: Original strand, 45181706 - 45181835
Alignment:
Q  5 agtggtggtcgaagctgaacgcttgaagcaaaatcaccattgggtgccaaattgatcactgttggcggtgttggttctttgaggaactgttgttagggga 104  Q
    |||||||||||||||| |||   |||| ||| ||||| ||   ||||| |||||||||| ||||||||||||||||||||||||| ||||||||||||      
T  45181706 agtggtggtcgaagctaaacatctgaatcaatatcactatcaagtgcctaattgatcaccgttggcggtgttggttctttgaggagctgttgttagggat 45181805  T
Q  105 tttgacattttgagggtgctggtggttttt 134  Q
    |||| |||||||| |||| |||||||||||    
T  45181806 tttggcattttgaaggtgttggtggttttt 45181835  T

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Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 46 - 134
Target Start/End: Complemental strand, 35571504 - 35571416
Alignment:
Q  46 gggtgccaaattgatcactgttggcggtgttggttctttgaggaactgttgttaggggatttgacattttgagggtgctggtggttttt 134  Q
    ||||||| | ||||||||| || |||||||| ||||||||||||  |||| |||||||||| | |||||||||||| || |||||||||    
T  35571504 gggtgccgatttgatcactttttgcggtgttagttctttgaggagttgttattaggggattcggcattttgagggtactagtggttttt 35571416  T

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Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 134
Target Start/End: Original strand, 29016588 - 29016720
Alignment:
Q  2 ttgagtggtggtcgaagctgaacgcttgaagcaaaatcaccattgggtgccaaattgatcactgttggcggtgttggttctttgaggaactgttgttagg 101  Q
    ||||||||||||||||||| || | ||||||| ||||||  || ||||||  |||||| |  |||||  ||||||||||| ||||| |  ||||||||||    
T  29016588 ttgagtggtggtcgaagctcaatgtttgaagc-aaatcattatcgggtgcgtaattgaactatgttgatggtgttggttccttgagtagttgttgttagg 29016686  T
Q  102 ggatttgacat-tttgagggtgctggtggttttt 134  Q
    || || | ||| ||||||||||||||||||||||    
T  29016687 ggtttcggcatgtttgagggtgctggtggttttt 29016720  T

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Target: chr2 (Bit Score: 82; Significance: 8e-39; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 37128896 - 37128763
Alignment:
Q  1 cttgagtggtggtcgaagctgaacgcttgaagcaaaatcaccattgggtgccaaattgatcactgttggcggtgttggttctttgaggaactgttgttag 100  Q
    ||||| ||||||||||||||||||  |||| |||||||||| || ||||||| |||| |||| |||||||||||||||||||||||||| ||||| ||||    
T  37128896 cttgaatggtggtcgaagctgaacatttgatgcaaaatcactatcgggtgcctaattcatcattgttggcggtgttggttctttgaggagctgtttttag 37128797  T
Q  101 gggatttgacattttgagggtgctggtggttttt 134  Q
    |||||| | |||||||||||||||||||||||||    
T  37128796 gggattcggcattttgagggtgctggtggttttt 37128763  T

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Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 41958340 - 41958458
Alignment:
Q  1 cttgagtggtggtcgaagctgaacgcttgaagcaaaatcaccattgggtgccaaattgatcactgttggcggtgttggttctttgaggaactgttgttag 100  Q
    ||||||||||||||||||||||||  ||||| ||||||||| || ||| ||| |||| ||||||||||||| ||||||||||||||| |  |||||||||    
T  41958340 cttgagtggtggtcgaagctgaacatttgaaacaaaatcactatcgggcgcctaattcatcactgttggcgatgttggttctttgagaagttgttgttag 41958439  T
Q  101 gggatttgacattttgagg 119  Q
    |||||| | ||||||||||    
T  41958440 gggattcggcattttgagg 41958458  T

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Target: chr7 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 2570424 - 2570553
Alignment:
Q  1 cttgagtggtggtcgaagctgaacgcttgaagcaaaatcaccattgggtgccaaattgatcactgttggcggtgttggttctttgaggaactgttgttag 100  Q
    ||||||||||||||||||||||||  |||||||||||||||  | |||||||   |||||||||||||||||||||||||||||||||   |||||||||    
T  2570424 cttgagtggtggtcgaagctgaacctttgaagcaaaatcactttcgggtgcctttttgatcactgttggcggtgttggttctttgaggtgttgttgttag 2570523  T
Q  101 gggatttgacattttgagggtgctggtggt 130  Q
    | |||||  ||||||| |||||||||||||    
T  2570524 gagatttagcattttgggggtgctggtggt 2570553  T

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Target: chr7; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 6003482 - 6003615
Alignment:
Q  1 cttgagtggtggtcgaagctgaacgcttgaagcaaaatcaccattgggtgccaaattgatcactgttggcggtgttggttctttgaggaactgttgttag 100  Q
    ||||||||||||||||||||||||| ||||||||| ||||  ||  ||||||   || ||||||||||||||||||||||||||||||| ||||||||||    
T  6003482 cttgagtggtggtcgaagctgaacgtttgaagcaacatcaatatcaggtgccttttttatcactgttggcggtgttggttctttgaggagctgttgttag 6003581  T
Q  101 gggatttgacattttgagggtgctggtggttttt 134  Q
    | | || | | || ||||||||||||||||||||    
T  6003582 gagtttcggctttgtgagggtgctggtggttttt 6003615  T

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Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 26500248 - 26500115
Alignment:
Q  1 cttgagtggtggtcgaagctgaacgcttgaagcaaaatcaccattgggtgccaaattgatcactgttggcggtgttggttctttgaggaactgttgttag 100  Q
    ||||||||||||||||||||||||| ||||||||||||||  || ||||||   ||| | ||||||||| ||||||||||||||||||| ||||||||||    
T  26500248 cttgagtggtggtcgaagctgaacgtttgaagcaaaatcaatatcgggtgctttattcaccactgttggtggtgttggttctttgaggagctgttgttag 26500149  T
Q  101 gggatttgacattttgagggtgctggtggttttt 134  Q
    ||||||   ||||||||||||  |||||||||||    
T  26500148 gggattcagcattttgagggtcttggtggttttt 26500115  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 54 - 134
Target Start/End: Original strand, 6760853 - 6760933
Alignment:
Q  54 aattgatcactgttggcggtgttggttctttgaggaactgttgttaggggatttgacattttgagggtgctggtggttttt 134  Q
    ||||||||||||||||||||||||||||||||| || || |||||||||| ||   |||||||||| ||||||||||||||    
T  6760853 aattgatcactgttggcggtgttggttctttgatgagctattgttaggggtttcagcattttgaggatgctggtggttttt 6760933  T

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Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 2 - 134
Target Start/End: Original strand, 1799255 - 1799395
Alignment:
Q  2 ttgagtggtggtcgaagctgaacgcttgaagcaaaatcaccattgggtgccaaattgatcactgtt-------ggcggtgttggttctttgaggaactgt 94  Q
    ||||||||||||||||||||| || ||||||||| ||||  || |||||||   ||||||||||||       ||| |||||||||||||||||| ||||    
T  1799255 ttgagtggtggtcgaagctgatcgtttgaagcaacatcattatcgggtgcctttttgatcactgttggcagacggcagtgttggttctttgaggagctgt 1799354  T
Q  95 tgttaggggatt-tgacattttgagggtgctggtggttttt 134  Q
    ||||||||| ||  |   |||||||||||||||||||||||    
T  1799355 tgttaggggtttcagtttttttgagggtgctggtggttttt 1799395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 10388669 - 10388706
Alignment:
Q  1 cttgagtggtggtcgaagctgaacgcttgaagcaaaat 38  Q
    |||||||||||||||||||| |||| ||||||||||||    
T  10388669 cttgagtggtggtcgaagctaaacgtttgaagcaaaat 10388706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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