View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13382_low_48 (Length: 239)
Name: NF13382_low_48
Description: NF13382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13382_low_48 |
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Alignment Details
Target: chr6 (Bit Score: 207; Significance: 1e-113; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 1459556 - 1459338
Alignment:
| Q |
1 |
tcttggactaaattgtttattgtcccgtttgctgaattccttggttattatggctattcaagacttggctatacaagactgctttatatttctgaggaag |
100 |
Q |
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| T |
1459556 |
tcttggactaaattgtttattgtcccgtttgctgaattccttgattattatggctattcaagacttggctatacaagactgctttatatttctgaggaag |
1459457 |
T |
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| Q |
101 |
atgaccaagtggtcctagatttctataataagatatatgtttacaattacaagaatcgtattgcaaagattcatgagattcatggttttactaggtttac |
200 |
Q |
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| T |
1459456 |
atgaccaagtggtcctagatttctataataagatatatgtttacaattacaagaatcgtatttcaaagattcctgagattcatggttttactaggtttac |
1459357 |
T |
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| Q |
201 |
ttctaatgtctacgcagag |
219 |
Q |
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| T |
1459356 |
ttctaatgtctacgcagag |
1459338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 64 - 182
Target Start/End: Complemental strand, 1470872 - 1470754
Alignment:
| Q |
64 |
cttggctatacaagactgctttatatttctgaggaagatgaccaagtggtcctagatttctataataagatatatgtttacaattacaagaatcgtattg |
163 |
Q |
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| T |
1470872 |
cttggctatacaagactagtctatattttcgaagaagatgaccaagtggtcctggaattctataataagatatgtgtttacaattacaaggatggtactg |
1470773 |
T |
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| Q |
164 |
caaagattcatgagattca |
182 |
Q |
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| T |
1470772 |
taaagattcctgggattca |
1470754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 79 - 160
Target Start/End: Complemental strand, 1453789 - 1453708
Alignment:
| Q |
79 |
ctgctttatatttctgaggaagatgaccaagtggtcctagatttctataataagatatatgtttacaattacaagaatcgta |
160 |
Q |
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| T |
1453789 |
ctgctttatatttccgaggaggatggccaagtgttcttcgacttaaattatgaggtatatgtttacaattacaagaatcgta |
1453708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 79 - 160
Target Start/End: Complemental strand, 1465481 - 1465400
Alignment:
| Q |
79 |
ctgctttatatttctgaggaagatgaccaagtggtcctagatttctataataagatatatgtttacaattacaagaatcgta |
160 |
Q |
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|||||||||||||| ||||| |||| ||||||| || | || || || || || ||||||||||||||||||||||||||| |
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| T |
1465481 |
ctgctttatatttccgaggaggatggccaagtgttcttcgacttaaattatgaggtatatgtttacaattacaagaatcgta |
1465400 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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