View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13382_low_49 (Length: 234)
Name: NF13382_low_49
Description: NF13382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13382_low_49 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 179; Significance: 1e-96; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 24 - 234
Target Start/End: Original strand, 27944436 - 27944646
Alignment:
| Q |
24 |
actcactcagcacccaacttaacatatcataacataccatactacgatcaagccatgatgaatcgtaacaagactctcatgctgttctctgtccttttcc |
123 |
Q |
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| T |
27944436 |
actcactcagcacccaacttaacatatcataacataccatactacgatcaagccatgatgaatcgtaacaagactctcatgctgttctctgtccttttcc |
27944535 |
T |
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| Q |
124 |
tcttattctctgtggacttggcattctcgacgccgaacgacggagaagatccaataatccagcaggtggtcgataagggaggagcttagtttcaatttaa |
223 |
Q |
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| T |
27944536 |
tgttcttttctgtcgacttggcattctcgacgccaaacgaccgagaagatccaataatccagcaggtggtcgataagggaggagctgagtatcaatttaa |
27944635 |
T |
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| Q |
224 |
tgaattcaagc |
234 |
Q |
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||||||||||| |
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| T |
27944636 |
tgaattcaagc |
27944646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 17 - 234
Target Start/End: Complemental strand, 27550306 - 27550082
Alignment:
| Q |
17 |
atataaaactcactcagcacccaacttaacatatcataa-------cataccatactacgatcaagccatgatgaatcgtaacaagactctcatgctgtt |
109 |
Q |
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|||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27550306 |
atataaaactcactcagcactcaacttaacatatcataagtcataacataccatactacgatcaagccatgatgaatcgtaacaagactctcatgctgtt |
27550207 |
T |
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| Q |
110 |
ctctgtccttttcctcttattctctgtggacttggcattctcgacgccgaacgacggagaagatccaataatccagcaggtggtcgataagggaggagct |
209 |
Q |
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| T |
27550206 |
ctctgtccttttcctgttcttttctgtcgacttggcattctcgacgccaaacgaccgagaagatccaataatccagcaggtggtcgataagggaggagct |
27550107 |
T |
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| Q |
210 |
tagtttcaatttaatgaattcaagc |
234 |
Q |
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|| |||||||||||||||||||| |
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| T |
27550106 |
gagcatcaatttaatgaattcaagc |
27550082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 85 - 234
Target Start/End: Original strand, 27436005 - 27436154
Alignment:
| Q |
85 |
atcgtaacaagactctcatgctgttctctgtccttttcctcttattctctgtggacttggcattctcgacgccgaacgacggagaagatccaataatcca |
184 |
Q |
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|||||||| | ||| ||||||||||||||||||||||||| || |||||||| |||||||||||||||| |||||| || ||||||||||||||||||| |
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| T |
27436005 |
atcgtaaccaaactttcatgctgttctctgtccttttcctgttcttctctgtcgacttggcattctcgatgccgaaggatagagaagatccaataatcca |
27436104 |
T |
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| Q |
185 |
gcaggtggtcgataagggaggagcttagtttcaatttaatgaattcaagc |
234 |
Q |
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| T |
27436105 |
gcaggtggtcgataagggaggagctgagtatcaatttaatgaattcaagc |
27436154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 24 - 68
Target Start/End: Original strand, 27435925 - 27435969
Alignment:
| Q |
24 |
actcactcagcacccaacttaacatatcataacataccatactac |
68 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27435925 |
actcactcagcacccaacttaacatatcataacataccatactac |
27435969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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