View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13382_low_50 (Length: 234)
Name: NF13382_low_50
Description: NF13382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13382_low_50 |
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Alignment Details
Target: chr6 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 8 - 215
Target Start/End: Original strand, 11228276 - 11228484
Alignment:
| Q |
8 |
cgaagaatatagtatagatcaatggcagtgtattgaggttattattttgactttgttaannnnnnnc-gtttgttgatgtgccttttatatcaaaatatt |
106 |
Q |
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| T |
11228276 |
cgaaaaatgtagtatagatcaatggcagtgtatcgaggttattattttgactttgttaatttttgtttgtttgttgatgtgccttttatatcaaaatatt |
11228375 |
T |
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| Q |
107 |
gacctttaaatacatttctagaaacattttgagtttgactatgctgatggaatcaaatgggtgaggagtacactaggggatagatggagatcctataaat |
206 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11228376 |
gacctttaaatacatttttagaaacattttgagtttgactatgctgctggaatcaaatgggtgaggagtacactaggggatagatggagatcctataaat |
11228475 |
T |
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| Q |
207 |
atagcttaa |
215 |
Q |
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||||||||| |
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| T |
11228476 |
atagcttaa |
11228484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 8 - 215
Target Start/End: Original strand, 13551799 - 13552006
Alignment:
| Q |
8 |
cgaagaatatagtatagatcaatggcagtgtattgaggttattattttgactttgttaannnnnnncgtttgttgatgtgccttttatatcaaaatattg |
107 |
Q |
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|||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| || |||||||||||||||||| |
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| T |
13551799 |
cgaaaaatgtagtatagatcaatggcagtgtattgaggtttatattttgactttgttaattttttttgtttgttgatgcgctttttatatcaaaatattg |
13551898 |
T |
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| Q |
108 |
acctttaaatacatttctagaaacattttgagtttgactatgctgatggaatcaaatgggtgaggagtacactaggggatagatggagatcctataaata |
207 |
Q |
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| T |
13551899 |
acctttaaatacatttctagaaacattttgagtttgactatgctgctggaatcaaatgggtgaggagtacactagcggatagatggagatcctataaata |
13551998 |
T |
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| Q |
208 |
tagcttaa |
215 |
Q |
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|||||||| |
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| T |
13551999 |
tagcttaa |
13552006 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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