View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13382_low_54 (Length: 217)
Name: NF13382_low_54
Description: NF13382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13382_low_54 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 62; Significance: 6e-27; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 28824324 - 28824398
Alignment:
| Q |
1 |
gtattatacaagcacaaaaactaacagtgaaaaatattgtgtgacattttataataattaatacaaaaactaatagt |
77 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
28824324 |
gtattatacaagcacaaaaactaacagtgaaaaatat--tgtgacattttattataattaatacaaaaactaatagt |
28824398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 68
Target Start/End: Original strand, 28824384 - 28824439
Alignment:
| Q |
14 |
acaaaaactaacagtgaaaaatattgtgtgac-attttataataattaatacaaaa |
68 |
Q |
| |
|
||||||||||| ||||||||| |||||||||| ||||||||||||||||| |||| |
|
|
| T |
28824384 |
acaaaaactaatagtgaaaaaaattgtgtgacgtttttataataattaatataaaa |
28824439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University