View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13382_low_7 (Length: 622)
Name: NF13382_low_7
Description: NF13382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13382_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 568; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 568; E-Value: 0
Query Start/End: Original strand, 3 - 606
Target Start/End: Original strand, 56320031 - 56320634
Alignment:
| Q |
3 |
atcagggacaggtgtgttttaacttgtagtgaatcaaggttctagtgatccattacctaatgtgattgaggacaccacattcaaccataaaattaatcat |
102 |
Q |
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| T |
56320031 |
atcagggacaggtgtgttttaacttgtagtgaatcaaggttctagtgatccattacctaatgtgattgaggacaccacattcaaccataaaattaatcat |
56320130 |
T |
|
| Q |
103 |
cataatttaatactataatataaaataaagggaacgtcaatttgaaataatgttgaaatcagggccggtgttataaaaatgaggccatggagagagggaa |
202 |
Q |
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| T |
56320131 |
cgtaatttaatactataatataaaataaagggaacatcaatttgaaataatgttgaaagcagggctggtgttataaaaatgaggccatggagagagggaa |
56320230 |
T |
|
| Q |
203 |
ttaggaattggaaagagatggtgagtgggcagtaccaatcgtcggaaaggaaaacgataatggtaaccggtggggcggggttcattggatcacacacggt |
302 |
Q |
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| T |
56320231 |
ttaggaattggaaagagatggtgagtgggcagtaccaatcgtcggaaaggaaaacgataatggtaaccggtggggcggggttcatcggatcacacacggt |
56320330 |
T |
|
| Q |
303 |
tgttcagcttctaaaacagggctatacagtttccattatcgacaatctctacaattccgtcatggaagctgttcacagggttcgccatttggttggtcct |
402 |
Q |
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| T |
56320331 |
tgttcagcttctaaaacagggctatacagtttccattatcgacaatctctacaattccgtcatggaagctgtccacagggttcgccatttggttggtcct |
56320430 |
T |
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| Q |
403 |
caactttccaacaacctccgctttcaccacgtcgatctccgcaacaagcaagagttggagatgatcttctctaaaaccaagtttgacgctgtgatccact |
502 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
56320431 |
caactttccaacaacctccgctttcaccacgtcgatctccgcaacaagcaagagttggagatgatcttctctaaaaccaagtttgacgatgtgatccact |
56320530 |
T |
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| Q |
503 |
ttggtggtctgaaagcggtgggagaaagtgttgcagagccactcaaatattttgatcacaacttggttggcagcatcaatctttttcaagtgatggctaa |
602 |
Q |
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|||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56320531 |
ttggtggtctaaaagcggtgggagaaagtgtcgcagagccactcaaatattttgatcacaacttggttggcagcatcaatctttttcaagtgatggctaa |
56320630 |
T |
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| Q |
603 |
attt |
606 |
Q |
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| T |
56320631 |
attt |
56320634 |
T |
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