View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13382_low_9 (Length: 612)
Name: NF13382_low_9
Description: NF13382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13382_low_9 |
 | |
|
| [»] scaffold0755 (1 HSPs) |
| | |
|
| [»] scaffold0352 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 516; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 8 - 596
Target Start/End: Complemental strand, 11395017 - 11394429
Alignment:
| Q |
8 |
gagcacagatgagtatgggacaaacagttgagaaaaaagttgcttaaggacctctaccataacaaagcctgccaacggctgcaaatcaaacaaaaatggt |
107 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11395017 |
gagcaaagatgagtatgggacaaacagttgagaaaaaagttgcttaaggacctctaccataacaaagcctgccaacggctgcaaatcaaacaaaaatggt |
11394918 |
T |
|
| Q |
108 |
gttgaatatctaagctaaagcaaaaattacaaaaataagtaattaattgctcctaaaattttctgaaactcatataataatagaaggatatcgttgaagt |
207 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11394917 |
gttgaatatctaagctaaagcagaaattacaaaaataagtaattaattgctcctaaaattttctgaaactcatataataatagaaggatatcgttgaagt |
11394818 |
T |
|
| Q |
208 |
gcgaagatattcaattgaatctacgtagnnnnnnnatatacaaatttgtaattgagtatttgatattcaaagaacaaa-ttannnnnnnacagagataaa |
306 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
11394817 |
gcgaagatattcaattgaatctacgtagttttttgatatacaaatttgtaattgagtatttgatattcaaagaacaaagttatttttttacagagataaa |
11394718 |
T |
|
| Q |
307 |
cataaaaatcaactttcagaggaaaattgaagggtaaatcgattttcatttatggaggcgtgagaatagagtgacgaagatgaaagtgtgagcaagaaat |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11394717 |
cataaaaatcaactttcagaggaaaattgaagggtaaatcgattttgatttatggaggcgtgagaatagagtgacgaagatgaaagtgtgagcaagaaat |
11394618 |
T |
|
| Q |
407 |
taaccgtttacaattgcttacctgaaaaacgtgattataagaaagtcattcatcggaaatccaattacattagcaggcgtattctcttttcttctcagaa |
506 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
11394617 |
taaccgtttacaattgcttacctgaaaaacgtgattataggaaagtcattcatcggaaatccaattacattagcaggcgtattctc-tttcttctcagaa |
11394519 |
T |
|
| Q |
507 |
actttgagatctgatttgaatagtcaattgataggaattaagattgaagatgatgctgaaaagggaaaacccataattggaagacccatt |
596 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11394518 |
actttgagatctgatttgaatagtcaattgataggaattaagattgaagatgatgctgaaaagggaaaacccataattggaagacccatt |
11394429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 323 - 590
Target Start/End: Original strand, 46233387 - 46233654
Alignment:
| Q |
323 |
cagaggaaaattgaagggtaaatcgattttcatttatggaggcgtgagaatagagtgacgaagatgaaagtgtgagcaagaaattaaccgtttacaattg |
422 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46233387 |
cagaggaaaattgaagggtaaatcgattttcatttatggaggcgtgagaatagagtgacgaagatgaaagtgtgagcaagaaattaaccgtttacaattg |
46233486 |
T |
|
| Q |
423 |
cttacctgaaaaacgtgattataagaaagtcattcatcggaaatccaattacattagcaggcgtattctcttttcttctcagaaactttgagatctgatt |
522 |
Q |
| |
|
||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46233487 |
cttacttgaaaaacgtgattataggaaagtcattcatcggaaatccaattacattagcaggcgtattctcttttcttctcagaaactttgagatctgatt |
46233586 |
T |
|
| Q |
523 |
tgaatagtcaattgataggaattaagattgaagatgatgctgaaaagggaaaacccataattggaaga |
590 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |
|
|
| T |
46233587 |
tgaatagtcaattgataggaattaagattgaagatgatgttgaaaagggaaaacccagaattggaaga |
46233654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 8 - 285
Target Start/End: Original strand, 46233096 - 46233373
Alignment:
| Q |
8 |
gagcacagatgagtatgggacaaacagttgagaaaaaagttgcttaaggacctctaccataacaaagcctgccaacggctgcaaatcaaacaaaaatggt |
107 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
46233096 |
gagcagagatgagtatgggacaaacagttgagaaaaaagttgcttaaggacctccaccataacaaaacctgccaacggctgcaaatcaaacaaaaatggc |
46233195 |
T |
|
| Q |
108 |
gttgaatatctaagctaaagcaaaaattacaaaaataagtaattaattgctcctaaaattttctgaaactcatataataatagaaggatatcgttgaagt |
207 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46233196 |
gttgaatatctaagctaaagcagaaattacaaaaataagtaattaattgctcctaaaattttctgaaactcatataataatagaaggatatcgttgaagt |
46233295 |
T |
|
| Q |
208 |
gcgaagatattcaattgaatctacgtagnnnnnnnatatacaaatttgtaattgagtatttgatattcaaagaacaaa |
285 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46233296 |
gcgaagatattcaattgaatctacctagttttttgatatacaaatttgtaattgagtatttgatattcaaagaacaaa |
46233373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 509; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 509; E-Value: 0
Query Start/End: Original strand, 7 - 596
Target Start/End: Original strand, 32439702 - 32440292
Alignment:
| Q |
7 |
ggagcacagatgagtatgggacaaacagttgagaaaaaagttgcttaaggacctctaccataacaaagcctgccaacggctgcaaatcaaacaaaaatgg |
106 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32439702 |
ggagcagagatgagtatgggacaaacagttgagaaaaaagttgcttaaggacctctaccataacaaagcctgccaacggctgcaaatcaaacaaaaatgg |
32439801 |
T |
|
| Q |
107 |
tgttgaatatctaagctaaagcaaaaattacaaaaataagtaattaattgctcctaaaattttctgaaactcatataataatagaaggatatcgttgaag |
206 |
Q |
| |
|
|||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32439802 |
tgttgaatatctaagctaaatcagaaattacaaaaataagtaattaattgctcctaaaattttctgaaactcatataataatagaaggatatcgttgaag |
32439901 |
T |
|
| Q |
207 |
tgcgaagatattcaattgaatctacgtagnnnnnnnatatacaaatttgtaattgagtatttgatattcaaagaacaaa-ttannnnnnnacagagataa |
305 |
Q |
| |
|
||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |
|
|
| T |
32439902 |
tgcgaagatattcaattgaatctacatagttttttgatatacaaatttgtaattgagtatttgatattcaaagaacaaagttatttttttacagagataa |
32440001 |
T |
|
| Q |
306 |
acataaaaatcaactttcagaggaaaattgaagggtaaatcgattttcatttatggaggcgtgagaatagagtgacgaagatgaaagtgtgagcaagaaa |
405 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32440002 |
acataaaaatcaactttcataggaaaattgaagggtaaatcgattttcatttatggaggcgtgagaatagagtgacgaagatgaaagtgtgagcaagaaa |
32440101 |
T |
|
| Q |
406 |
ttaaccgtttacaattgcttacctgaaaaacgtgattataagaaagtcattcatcggaaatccaattacattagcaggcgtattctcttttcttctcaga |
505 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
32440102 |
ttaaccgtttacaattgcttacctgaaaaacgtgattataggaaagtcattcatcggaaatccaattacattagccggcgtattctcttttcttctcaga |
32440201 |
T |
|
| Q |
506 |
aactttgagatctgatttgaatagtcaattgataggaattaagattgaagatgatgctgaaaagggaaaacccataattggaagacccatt |
596 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
32440202 |
aactttgagatctgatttgaatagtcaattgataggaattaagattgaagatgatgctgaaaagggaaaacccagaattggaagacccatt |
32440292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 502; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 8 - 590
Target Start/End: Complemental strand, 9209514 - 9208931
Alignment:
| Q |
8 |
gagcacagatgagtatgggacaaacagttgagaaaaaagttgcttaaggacctctaccataacaaagcctgccaacggctgcaaatcaaacaaaaatggt |
107 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
9209514 |
gagcagagatgagtatgggacaaacagttgagaaaaaagttgcttaaggacctctaccataacaaaacctgccaacggctgcaaatcaaacaaaaatggt |
9209415 |
T |
|
| Q |
108 |
gttgaatatctaagctaaagcaaaaattacaaaaataagtaattaattgctcctaaaattttctgaaactcatataataatagaaggatatcgttgaagt |
207 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9209414 |
gttgaatatctaagctaaagcagaaattacaaaaataagtaattaattgctcctaaaattttctgaaactcatataataatagaaggatatcgttgaagt |
9209315 |
T |
|
| Q |
208 |
gcgaagatattcaattgaatctacgtagnnnnnnnatatacaaatttgtaattgagtatttgatattcaaagaacaaa-ttannnnnnnacagagataaa |
306 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||| |
|
|
| T |
9209314 |
gcgaagatattcaattgaatctacctagttttttgatatacaaatttgtaattgagtatttgatattcaaagaacaaagttatttttttacatagataaa |
9209215 |
T |
|
| Q |
307 |
cataaaaatcaactttcagaggaaaattgaagggtaaatcgattttcatttatggaggcgtgagaatagagtgacgaagatgaaagtgtgagcaagaaat |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9209214 |
cataaaaatcaactttcagaggaaaattgaagggtaaatcgattttcatttatggaggcgtgagaatagagtgacgaagatgaaagtgtgagcaagaaat |
9209115 |
T |
|
| Q |
407 |
taaccgtttacaattgcttacctgaaaaacgtgattataagaaagtcattcatcggaaatccaattacattagcaggcgtattctcttttcttctcagaa |
506 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9209114 |
taaccgtttacaattgcttacctgaaaaacgtgattataggaaagtcattcatcggtaatccaattacattagcaggcgtattctcttttcttctcagaa |
9209015 |
T |
|
| Q |
507 |
actttgagatctgatttgaatagtcaattgataggaattaagattgaagatgatgctgaaaagggaaaacccataattggaaga |
590 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
9209014 |
actttgagatctgatttgaatagtcaattgataggaattaagattgaagatgatgctgaaaagggaaaacccaaaattggaaga |
9208931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 492; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 8 - 596
Target Start/End: Original strand, 16261783 - 16262372
Alignment:
| Q |
8 |
gagcacagatgagtatgggacaaacagttgagaaaaaagttgcttaaggacctctaccataacaaagcctgccaacggctgcaaatcaaacaaaaatggt |
107 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| ||| ||||||||| |
|
|
| T |
16261783 |
gagcagagatgagtatgggacaaacagttgagaaaaaagttgcttaaggacatctaccataacaaagcctgccaacggttgcaaataaaaaaaaaatggt |
16261882 |
T |
|
| Q |
108 |
gttgaatatctaagctaaagcaaaaattacaaaaataagtaattaattgctcctaaaattttctgaaactcatataataatagaaggatatcgttgaagt |
207 |
Q |
| |
|
||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16261883 |
gttgaatatctaagctaaatcagaaattacaaaaataagtaattaattgctcctaaaattttctgaaactcatataataatagaaggatatcgttgaagt |
16261982 |
T |
|
| Q |
208 |
gcgaagatattcaattgaatctacgtagnnnnnnnatatacaaatttgtaattgagtatttgatattcaaagaacaaa-ttannnnnnnacagagataaa |
306 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
16261983 |
gcgaagatattcaattgaatctacgtagttttttgatatacaaatttgtaattgagtatttgatattcaaagaacaaagttatttttttacagagataaa |
16262082 |
T |
|
| Q |
307 |
cataaaaatcaactttcagaggaaaattgaagggtaaatcgattttcatttatggaggcgtgagaatagagtgacgaagatgaaagtgtgagcaagaaat |
406 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16262083 |
cataaaaatcaactttcataggaaaattgaagggtaaatcgattttcatttatggaggcgtgagaatagagtgacgaagatgaaagtgtgagcaagaaat |
16262182 |
T |
|
| Q |
407 |
taaccgtttacaattgcttacctgaaaaacgtgattataagaaagtcattcatcggaaatccaattacattagcaggcgtattctcttttcttctcagaa |
506 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16262183 |
taaccgtttacaattgcttacctgaaaaatgtgattataggaaagtcattcatcgaaaatccaattacattagcaggcgtattctcttttcttctcagaa |
16262282 |
T |
|
| Q |
507 |
actttgagatctgatttgaatagtcaattgataggaattaagattgaagatgatgctgaaaagggaaaacccataattggaagacccatt |
596 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
16262283 |
actttgagatctgatttgaatagtcaattgataggaattaagattgaagatgatgctgaaaagggaaaacccagaattggaagacccatt |
16262372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0755 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: scaffold0755
Description:
Target: scaffold0755; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 2969 - 2917
Alignment:
| Q |
8 |
gagcacagatgagtatgggacaaacagttgagaaaaaagttgcttaaggacct |
60 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2969 |
gagcagagatgagtatgggacaaacagttgagaaaaaagttgcttaaggacct |
2917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0352 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0352
Description:
Target: scaffold0352; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 362 - 407
Target Start/End: Original strand, 16333 - 16378
Alignment:
| Q |
362 |
aggcgtgagaatagagtgacgaagatgaaagtgtgagcaagaaatt |
407 |
Q |
| |
|
||||||||||||||||||| |||||||||| |||||||| ||||| |
|
|
| T |
16333 |
aggcgtgagaatagagtgaaaaagatgaaagggtgagcaaaaaatt |
16378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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