View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13383_high_2 (Length: 543)
Name: NF13383_high_2
Description: NF13383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13383_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 300; Significance: 1e-168; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 20 - 379
Target Start/End: Original strand, 9446272 - 9446631
Alignment:
| Q |
20 |
gtatagtatcaatcattcagtaagctacatacgttatataatttgaattagttagtatactttgtctttgtaaaattattttacacacatccaattatat |
119 |
Q |
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| T |
9446272 |
gtatattatcaatcattcagtaagctacatacgttatataatttgaattaattagtatactttgtctttgtaaaattattttacacatatccaatgatat |
9446371 |
T |
|
| Q |
120 |
gttgtcacgttaactaataatcataaaaatacatgaattatcgtatttattaattgatgtggtagaacattattaaatgcatgtgtaagattgttataca |
219 |
Q |
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| T |
9446372 |
gttgtcacgctaactaataaacataaaaatacatgagttgtcgtattcattgattaatctggtagaacattattaaatacatgtgtaagattgttataca |
9446471 |
T |
|
| Q |
220 |
ttattaaactcatataattttgtgtctaatattcaacaaagtctcacttattcgtctaataaaaaacagtctcactcattgtcattagtctttatcatgt |
319 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9446472 |
ttattaaactcgtataattttgtgtctaatattcaacaaagtctcactcattcgtctaataaaaaacagtctcactcattgtcattagtctttatcatgt |
9446571 |
T |
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| Q |
320 |
tcctatttcattcacaaaaatctaaaaccgtatccatctctttttaatcttttatattgt |
379 |
Q |
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| T |
9446572 |
tcctatttcattcacaaaaatctaaaaccgtatccatctctttttaatcttttatattgt |
9446631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 434 - 535
Target Start/End: Original strand, 9446687 - 9446788
Alignment:
| Q |
434 |
ctatgtattatgatgaaaagacctagaattattaaatgtatattatggaaacaatataaagttgaaatagcaacatgaccccaacaaaatattttgatga |
533 |
Q |
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| T |
9446687 |
ctatgtattatgatgaaaagacctagaattattaaatgtatattatgggaacaatataaagttgaaatagcaacatgaccccaacaaaatattttgatga |
9446786 |
T |
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| Q |
534 |
tg |
535 |
Q |
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|| |
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| T |
9446787 |
tg |
9446788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 116 - 214
Target Start/End: Complemental strand, 29939961 - 29939863
Alignment:
| Q |
116 |
atatgttgtcacgttaactaataatcataaaaatacatgaattatcgtatttattaattgatgtggtagaacattattaaatgcatgtgtaagattgtt |
214 |
Q |
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| T |
29939961 |
atatgttgttacgtcaattaataaatataaaaatatataaattatcatatttattaattgaagtagtaaaaaatcattgaatgtatgtgtaaaattgtt |
29939863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 106 - 220
Target Start/End: Complemental strand, 48252515 - 48252401
Alignment:
| Q |
106 |
acatccaattatatgttgtcacgttaactaataatcataaaaatacatgaattatcgtatttattaattgatgtggtagaacattattaaatgcatgtgt |
205 |
Q |
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||||||| | || |||||||| | ||||||||| || ||||||||||| ||||| ||||||||||||||||||| | |||| ||| |||| |||||| |
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| T |
48252515 |
acatccagtgatgtgttgtcaaatgaactaataaatatgaaaatacatgagttatcatatttattaattgatgtggaaacacatcattgaatgtatgtgt |
48252416 |
T |
|
| Q |
206 |
aagattgttatacat |
220 |
Q |
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|| ||| || ||||| |
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| T |
48252415 |
aaaattattgtacat |
48252401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 124
Target Start/End: Original strand, 41742128 - 41742165
Alignment:
| Q |
87 |
ttgtaaaattattttacacacatccaattatatgttgt |
124 |
Q |
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|||||||||||||||||||||||| ||||| ||||||| |
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| T |
41742128 |
ttgtaaaattattttacacacatctaattacatgttgt |
41742165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 145 - 181
Target Start/End: Complemental strand, 54441253 - 54441217
Alignment:
| Q |
145 |
aaaatacatgaattatcgtatttattaattgatgtgg |
181 |
Q |
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|||| ||||||||||||||||| |||||||||||||| |
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| T |
54441253 |
aaaacacatgaattatcgtattcattaattgatgtgg |
54441217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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