View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13383_high_3 (Length: 486)
Name: NF13383_high_3
Description: NF13383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13383_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 146; Significance: 1e-76; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 3 - 263
Target Start/End: Complemental strand, 4013767 - 4013511
Alignment:
| Q |
3 |
atcatcctctttcctctccttatggctatgaacatttaattttaatttcttgtagagagtatatataaacttctagcttcaatcaattatataatatctt |
102 |
Q |
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| T |
4013767 |
atcatcttccttcccctccttatggttatgactatt-aattttaatttcttgtagagagtatatataatgttctagcttcaatcaatcatatagtttctt |
4013669 |
T |
|
| Q |
103 |
ttctttttcgctccggtaataaccttgtgtttcccttattgtgatattcaaggttctagagacgaagaaagattattcagagtgaagttgttccaattca |
202 |
Q |
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|||| |||| ||||||| ||| |||||||||||||||||||||| |||||||||||||||||||||||||||| ||| | ||||| ||||||||||||| |
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| T |
4013668 |
ttctctttc--tccggta-taatcttgtgtttcccttattgtgatgttcaaggttctagagacgaagaaagattgttccgtgtgaaattgttccaattca |
4013572 |
T |
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| Q |
203 |
atggcgtatctgtcttccggagcttcacaaataatatatgttgtaatctctacttattgat |
263 |
Q |
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| T |
4013571 |
atggcgtatttgtcttccggagcttctcaaataatatatgctgtaatctctgcttattgat |
4013511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 119 - 297
Target Start/End: Complemental strand, 3991348 - 3991170
Alignment:
| Q |
119 |
taataaccttgtgtttcccttattgtgatattcaaggttctagagacgaagaaagattattcagagtgaagttgttccaattcaatggcgtatctgtctt |
218 |
Q |
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||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| || |||||| |
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| T |
3991348 |
taataaccttgtgtttcccttattgatatattcaaggttctacagacgaagaaagattgttcagagtgaagttgttccaattcaatggcgcatttgtctt |
3991249 |
T |
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| Q |
219 |
ccggagcttcacaaataatatatgttgtaatctctacttattgatcttgaaattgtgttatgaattaatgctgaaactt |
297 |
Q |
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| T |
3991248 |
ccggagcttcatcaataatatatgctgtaatctctgcttattgattttgaatttccgttacaaattaatgctaaaactt |
3991170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 4005522 - 4005234
Alignment:
| Q |
1 |
atatcatcctctttcctctccttatggctatgaacatttaattttaatttcttgtagagagtatatataaacttctagcttcaatcaattatataatatc |
100 |
Q |
| |
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||||||||| | ||||||||||||||||||||| |||| |||||| ||||||||||| ||||| |||| | ||||| |||||| |||| | || || |
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| T |
4005522 |
atatcatccaccttcctctccttatggctatgaccatt-aattttgatttcttgtagttagtatttatatagttctatcttcaa--aattttc--atttc |
4005428 |
T |
|
| Q |
101 |
ttttctttttcgctccggtaataaccttgtgtttcccttattgtgatattcaaggttctagagacgaagaaagattattcagagtgaagttgttccaatt |
200 |
Q |
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||||| |||| || | ||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| ||||||||| | |||||||| || |
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| T |
4005427 |
ttttcgatttctttctgataataaccttgtgtttcccttattgcgttattcaaggttctagagacgaagaaagattgttcagagtgcacttgttccagtt |
4005328 |
T |
|
| Q |
201 |
caatggcgtatctgtcttccggagcttcacaaataatatatgttgtaat--ctctacttattgatcttgaaattgtgttatgaattaatgctga |
292 |
Q |
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| T |
4005327 |
caatggcatatttatcttctggaacttctcaactaatatatgctgtaattgctctgtttattaaattcgaatttgtgttatgaattaatgctga |
4005234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 99 - 297
Target Start/End: Complemental strand, 4027895 - 4027697
Alignment:
| Q |
99 |
tcttttctttttcgctccggtaataaccttgtgtttcccttattgtgatattcaaggttctagagacgaagaaagattattcagagtgaagttgttccaa |
198 |
Q |
| |
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|||||||| ||||| |||||||||| ||||||||||||||||||| || ||| |||| |||||||||||||||||| ||||||||| | ||||||||| |
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| T |
4027895 |
tcttttctctttcgttccggtaatattcttgtgtttcccttattgtaattttcgaggtcctagagacgaagaaagatcgttcagagtgcatttgttccaa |
4027796 |
T |
|
| Q |
199 |
ttcaatggcgtatctgtcttccggagcttcacaaataatatatgttgtaatctctacttattgatcttgaaattgtgttatgaattaatgctgaaactt |
297 |
Q |
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||||||||||||| ||| |||| ||||||| |||||||| |||| |||||| ||| |||||| | | ||| |||||||| ||||| || ||||||||| |
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| T |
4027795 |
ttcaatggcgtatttgttttccagagcttctcaaataatttatgctgtaatgtctgcttattaaattcgaatttgtgttacgaattgatcctgaaactt |
4027697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 3992205 - 3992078
Alignment:
| Q |
1 |
atatcatcctctttcctctccttat--ggctatgaacatttaattttaatttcttgtagagagtatatataaacttctagcttcaatcaattatataata |
98 |
Q |
| |
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||||||||||||||||||||||||| | |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| | |
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| T |
3992205 |
atatcatcctctttcctctccttatatgactatgaccatttaattttaatttcttgtagagagtatatataaagttctagcttcaatcaaccatatagtt |
3992106 |
T |
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| Q |
99 |
tcttttctttttcgctccggtaataacc |
126 |
Q |
| |
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|||||||| ||||||||||| ||||||| |
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| T |
3992105 |
tcttttctctttcgctccggaaataacc |
3992078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 101 - 248
Target Start/End: Original strand, 3950984 - 3951129
Alignment:
| Q |
101 |
ttttctttttcgctccggtaataaccttgtgtttcccttattgtgatattcaaggttctagagacgaagaaagattattcagagtgaagttgttccaatt |
200 |
Q |
| |
|
|||||| ||||| |||| |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| ||| |||| | |||||||||| |
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| T |
3950984 |
ttttctgtttcgttccgttaataaccttgtgtttcccttattgtgacgttcaaggttctagagac--agaaagattgttcgtagtgcacttgttccaatc |
3951081 |
T |
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| Q |
201 |
caatggcgtatctgtcttccggagcttcacaaataatatatgttgtaa |
248 |
Q |
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||||||| ||| || |||| ||||| || |||| |||||||| ||||| |
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| T |
3951082 |
caatggcatatttgccttctggagcctctcaaacaatatatgctgtaa |
3951129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 356 - 410
Target Start/End: Complemental strand, 3991078 - 3991024
Alignment:
| Q |
356 |
ataaatataattaagacatattatgaatcacattcttaaaataagacaaattatg |
410 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3991078 |
ataaatataattaagacatattatgaatcacattcttaaaataagacaaattatg |
3991024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 359 - 401
Target Start/End: Complemental strand, 4005184 - 4005142
Alignment:
| Q |
359 |
aatataattaagacatattatgaatcacattcttaaaataaga |
401 |
Q |
| |
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||||||||| |||||||||||||||||| |||||||||||||| |
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| T |
4005184 |
aatataatttagacatattatgaatcactttcttaaaataaga |
4005142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 116 - 248
Target Start/End: Complemental strand, 13400594 - 13400464
Alignment:
| Q |
116 |
cggtaataaccttgtgtttcccttattgtgatattcaaggttctagagacgaagaaagattattcagagtgaagttgttccaattcaatggcgtatctgt |
215 |
Q |
| |
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|||||||||||||||||||||||||||| ||| ||||||||||| ||||| |||||||||| |||| || | |||||||||| ||||||| ||| | | |
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| T |
13400594 |
cggtaataaccttgtgtttcccttattgcgatgttcaaggttcttgagacaaagaaagattgttcatagcg--cttgttccaatccaatggcatattttt |
13400497 |
T |
|
| Q |
216 |
cttccggagcttcacaaataatatatgttgtaa |
248 |
Q |
| |
|
|||| ||||| || | || |||||||| ||||| |
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|
| T |
13400496 |
cttctggagcctctccaacaatatatgctgtaa |
13400464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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