View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13383_high_6 (Length: 407)
Name: NF13383_high_6
Description: NF13383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13383_high_6 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 22 - 348
Target Start/End: Complemental strand, 45090221 - 45089895
Alignment:
| Q |
22 |
atctagtgcttaaaacttaccttgaagccatgatcacaaagataaagaaagcagtctcacttatagcaaacccttttatcttcttctcagcatggagacc |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
45090221 |
atctagtgcttaaaacttaccttgaagccatgatcacaaagataaagaaagcagtctcacttatagcaaaccctttgatcttcttctcagcatgtagacc |
45090122 |
T |
|
| Q |
122 |
aactatcaagtccagcttctcaacatcatcatcatatacctctttgagagcttcaataacctcttcatcatctgttaaatcttcccacttactaattggg |
221 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45090121 |
aactatcaagtccagcttctcaacatcatcatcatatacctctttgagagcttcattaacctcttcatcatctgttaaatcttcccacttactaattggg |
45090022 |
T |
|
| Q |
222 |
atcattagcatgtttcttctgaattcattatatctcgctactcccctttctctatctctataaactagtaaacaaaatattcatcattttagaacaagtt |
321 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
45090021 |
atcattagcatgtttcttctgaattcattatatctcgctactcccctttctctatctctataaactagtaaacaaaatattcatcattttataacaagtt |
45089922 |
T |
|
| Q |
322 |
gatcatataaaattattacaaaaccat |
348 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
45089921 |
gatcatataaaattattacaaaaccat |
45089895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 348 - 392
Target Start/End: Complemental strand, 45089875 - 45089831
Alignment:
| Q |
348 |
taccttccatagtagccatgtcaactggatcaggtctttcttctc |
392 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
45089875 |
taccttccatagtagctatgtcaactggatcaggtctttcttctc |
45089831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University