View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13383_low_1 (Length: 1311)

Name: NF13383_low_1
Description: NF13383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13383_low_1
NF13383_low_1
[»] chr4 (18 HSPs)
chr4 (287-1287)||(39580292-39581290)
chr4 (333-1248)||(39521153-39522065)
chr4 (711-1279)||(39544321-39544887)
chr4 (23-202)||(39520837-39521016)
chr4 (693-1283)||(39525007-39525598)
chr4 (289-552)||(39524606-39524866)
chr4 (287-537)||(39543900-39544147)
chr4 (86-202)||(39575542-39575658)
chr4 (23-120)||(39510579-39510676)
chr4 (341-553)||(39510912-39511121)
chr4 (717-1013)||(39576179-39576487)
chr4 (73-202)||(39580071-39580200)
chr4 (837-1013)||(39511420-39511596)
chr4 (1196-1261)||(39511767-39511832)
chr4 (687-787)||(39511258-39511358)
chr4 (333-537)||(39575795-39575993)
chr4 (1087-1262)||(39576552-39576727)
chr4 (74-119)||(39524376-39524421)
[»] chr7 (2 HSPs)
chr7 (879-949)||(3331509-3331579)
chr7 (729-773)||(3331271-3331315)


Alignment Details
Target: chr4 (Bit Score: 900; Significance: 0; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 900; E-Value: 0
Query Start/End: Original strand, 287 - 1287
Target Start/End: Original strand, 39580292 - 39581290
Alignment:
Q  287 attaaaattgtcgcaaaagtgaagcctaaggaaatgatcagtattcttcttctccacaggaacactccaacttatgtttaaaccgtttgaaccattttta 386  Q
    ||||||| |||| || || |||||||| ||| |||||||| ||||||| |   |||||||||||||||||||||||||||||||||||||||||||||||    
T  39580292 attaaaaatgtcacataaatgaagcctgaggtaatgatcaatattctttt---ccacaggaacactccaacttatgtttaaaccgtttgaaccattttta 39580388  T
Q  387 ctctctttgccactattataaagagcgtctggaccaatatgtatatttgaatttggaccatcagattcatcacctgcagtgcgtataatatcacctccaa 486  Q
    ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  39580389 ctctctttggcacttttataaagagcgtctggaccaatatgtatatttgaatttggaccatcagattcatcacctgcagtgcgtttaatatcacctccaa 39580488  T
Q  487 agtaaccattcttagcgttatgtggattagtgatgtaactgtcatctggtagccactttcttgataagctatcgtttccccctgtgatggcttctccccc 586  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||||||||| ||    
T  39580489 agaaaccattcttagcgttatgtggattagtgatgtaactgtcatctggtaaccactttcttgataagctattgttttcccctgtgatggcttctccacc 39580588  T
Q  587 gacggtaagacggtgaatggttgccaaggctcgcgagaataaaccgccagtgtaagaagataagccttgaccagtagaattaatgtaattgaaatgtgtg 686  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39580589 gacggtaagacggtgaatggtttccaaggctcgcgagaataaaccgccagtgtaagaagataagccttgaccagtagaattaatgtaattgaaatgtgtg 39580688  T
Q  687 actgattcggggatgaaatgagtggggagtataaagagttccattgcattaacaaacgcaaatgatgaggtttgaggtgtgaaagtgattttgaatcttt 786  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39580689 actgattcggggatgaaatgagtggggagtataaagagttccattgcattaacaaacgcaaatgatgaggtttgaggtgtgaaagtgattttgaatcttt 39580788  T
Q  787 tacgggtgattttaaagaaatattctttaattgaaag-ggagtttatatcaaaattttgtaacagagagaaacctggaaaggaaacgttgaattttgcag 885  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39580789 tacgggtgattttaaagaaatattctttaattgaaagcggagtttatatcaaaattttgtaacagagagaaacctggaaaggaaacgttgaattttgcag 39580888  T
Q  886 tggaaagattagttggtaaagagaatagaaagaaatggaaacgtaccatgtaagtgttgtttggtacggttttgaattcgtagaaagacttggaagggaa 985  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  39580889 tggaaagattagttggtaaagagaatagaaagaaatggaaacgtaccatgtaagtgttgtttggtacggttttgaattcgtagaaagatttggaagggaa 39580988  T
Q  986 tataattgctgtttggtagagaggtgaaagtggtgttgatagtgatgatgattgacttgttactttggagcttttgctgaaaactgttttcggataagta 1085  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39580989 tataattgctgtttggtagagaggtgaaagtggtgttgatagtgatgatgattgacttgttactttggagcttttgctgaaaactgttttcggataagta 39581088  T
Q  1086 gggtttgattcaccaatataaacgttgttactttcagtaacatcaaaatctgatccgcaattgatgaagtatgtgtgttggggattatataatccaagcg 1185  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  39581089 gggtttgattcaccaatataaacgttgttactttcagtaacatcaaaatctgatccgcaattgatgaagtatgtgtgttggggattatataatccgagcg 39581188  T
Q  1186 agggaaattgtaatgatgagaattgaagaagaaaagttagtagaacgatagactgttgaattgccatggggagagagttgataattgtgtttgtttgaat 1285  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39581189 aggaaaattgtaatgatgagaattgaagaagaaaagttagtagaacgatagactgttgaattgccatggggagagagttgataattgtgtttgtttgaat 39581288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 165; E-Value: 1e-87
Query Start/End: Original strand, 333 - 1248
Target Start/End: Original strand, 39521153 - 39522065
Alignment:
Q  333 ttcttctccacaggaacactccaacttatgtttaaaccgtttgaaccatttttactctctttgccactattataaagagcgtctggaccaatatgtatat 432  Q
    |||||||| |||||||||||||||||||||||      | | ||||| ||  |||||||||||||| | | |||||    ||||||| |||||| |  ||    
T  39521153 ttcttctctacaggaacactccaacttatgtt------gctagaaccgttaatactctctttgccagtttgataaaccctgtctggagcaatatattgat 39521246  T
Q  433 ttgaatttggaccatcagattcatcacctgcagtgcgtataatatcacctccaaagtaaccattcttagcgttatgtggattagtgatgtaactgtcatc 532  Q
    ||||||||||||||||||||  ||||  ||||||||||  ||||| | |  ||||| | | |||||||||||| ||||||||||| |  |||||||||||    
T  39521247 ttgaatttggaccatcagatgtatcatttgcagtgcgtggaatatgaacgtcaaaggagcgattcttagcgttttgtggattagttacataactgtcatc 39521346  T
Q  533 tggtagccactttcttgataagctatcgtttccccctgtgatggcttctcccccgacggtaagacggtgaatggttgccaaggctcgc---gagaataaa 629  Q
    || || ||| | ||| |||||  ||||| |||| |    ||  | ||   | |||||| |||||||| |  ||||| |||| | |||    |||  ||||    
T  39521347 tgctaaccattctctcgataatgtatcggttcctctatcgacagtttggtcaccgacgttaagacggagtttggtttccaacgatcgttgtgagtgtaaa 39521446  T
Q  630 ccgccagtgtaagaagataagccttgaccagtagaattaatgtaattgaaatgtgtgactgattcggggatgaaatgagtggggagtataaagagttcca 729  Q
    |||||| | |||| || ||||||  |||||||||||   |||||||||||| |||  ||||| |||||||| ||||||   ||||| ||||||||||| |    
T  39521447 ccgccactataagtagttaagccccgaccagtagaaccgatgtaattgaaacgtgctactgaatcggggattaaatgaagagggagcataaagagttcaa 39521546  T
Q  730 ttgcattaacaaacgcaaatgatgaggtttgaggtgtgaaagtgattttgaatcttttacgggtgattttaaagaaatattctttaattgaaagggagtt 829  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| | | ||||||||| | |||| ||||| | | || | |||||    
T  39521547 ttgcattaacaaacgcaaatgatgatgtttgaggtgtgaaagtgattgtgaatctttttctgatgattttaacgtaatactcttttactaaaggagagtt 39521646  T
Q  830 tata------tca------aaattttgtaacagagagaaacctggaaaggaaacgttgaattttgcagtggaaagattagttggtaaagagaatagaaag 917  Q
      |       |||      ||||| |||||||||  |||||| ||||  |||||| |||||||||||| |||||| ||||||||| ||||||||  ||||    
T  39521647 ggtggtgttttcagcgttgaaattatgtaacagaaggaaaccaggaactgaaacggtgaattttgcagaggaaaggttagttggtgaagagaatgaaaag 39521746  T
Q  918 aaatggaaacgtaccatgtaagtgttgtttggtacggttttgaattcgtagaaagacttggaagggaatataattgctgtttggtagagaggtgaaagtg 1017  Q
    ||||||||||||||||||||||||||| |||| |||||||||||||| ||| |||| |||||| |||| ||  |||||||||||| ||||||||||        
T  39521747 aaatggaaacgtaccatgtaagtgttgcttggaacggttttgaattcataggaagaattggaaaggaaaattcttgctgtttggttgagaggtgaa---- 39521842  T
Q  1018 gtgttgatagtgatgatgattgacttgttactttggag---cttttgctgaaaactgttttcggataagtagggtttgattcaccaatataaacgttgtt 1114  Q
         || |    || ||||||||||||||||||||||   |||| |||||| | | ||||||| |||| | ||||||||||||||||||||| ||||||    
T  39521843 -----gaca---ctggtgattgacttgttactttggagttactttcgctgaataattttttcgggtaagcatggtttgattcaccaatataaaggttgtt 39521934  T
Q  1115 actttcagtaacatcaaaatctgatccgcaattgatgaagtatgtgtgttggggattatataatccaagcgagggaaattgtaatgatgagaattgaaga 1214  Q
    | ||||| | || || | ||||||||| ||||||||||||||||||| ||| ||||  |   |||| || ||||| ||||||||||||||||||||||||    
T  39521935 attttcattcacgtcgatatctgatccacaattgatgaagtatgtgtcttgaggatcgt---atccgagtgaggggaattgtaatgatgagaattgaaga 39522031  T
Q  1215 agaaaagttagtagaacgatagactgttgaattg 1248  Q
    | |||||  || |||| ||||||  |||||||||    
T  39522032 aaaaaagcaaggagaaagatagagcgttgaattg 39522065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 164; E-Value: 5e-87
Query Start/End: Original strand, 711 - 1279
Target Start/End: Original strand, 39544321 - 39544887
Alignment:
Q  711 gggagtataaagagttccattgcattaacaaacgcaaatgatgaggtttgaggtgtgaaagtgattttgaatcttttacgggtgattttaaagaaatatt 810  Q
    ||||| ||||||||||| | |||||||| |||||||||||| || ||||||||||||||||||||| |||||||||| | | ||||||||| | |||| |    
T  39544321 gggagaataaagagttcaaatgcattaaaaaacgcaaatgaagatgtttgaggtgtgaaagtgattgtgaatctttttctgatgattttaacgtaatact 39544420  T
Q  811 ctttaattgaaagggagtttata------tca------aaattttgtaacagagagaaacctggaaaggaaacgttgaattttgcagtggaaagattagt 898  Q
    |||| | | ||   |||||  |       |||      |||||||||||||||  |||||| || |  ||||| ||||||||||||| |||||| |||||    
T  39544421 cttttactaaagaagagttggtggtgttttcagagttgaaattttgtaacagaatgaaaccagggactgaaacattgaattttgcagaggaaaggttagt 39544520  T
Q  899 tggtaaagagaatagaaagaaatggaaacgtaccatgtaagtgttgtttggtacggttttgaattcgtagaaagacttggaagggaatataattgctgtt 998  Q
    |||| ||||||||  |||||||||||||| ||||||||| ||||||||||||| |||    ||||| ||| |||||| |||| |||||||  ||||||||    
T  39544521 tggtgaagagaatgaaaagaaatggaaacataccatgtaggtgttgtttggtatggtagaaaattcataggaagactcggaatggaatatccttgctgtt 39544620  T
Q  999 tggtagagaggtgaaagtggtgttgatagtgatgatgattgacttgttactttggagcttttgctgaaaactgttttcggataagtagggtttgattcac 1098  Q
    ||||||||||||||||         | | || ||||   ||||||||||||||||||||||| ||||||  |||||| || |||||||||||||||||||    
T  39544621 tggtagagaggtgaaa---------acactggtgat---tgacttgttactttggagctttttctgaaacttgtttttgggtaagtagggtttgattcac 39544708  T
Q  1099 caatataaacgttgttactttcagtaacatcaaaatctgatccgcaattgatgaagtatgtgtgttggggattatataatccaagcgagggaaattgtaa 1198  Q
    ||||||||| ||||||| ||||| | || |||| ||||||||||||||||||||||||||||| |||| |||  |   |||| || ||||||||||||||    
T  39544709 caatataaaggttgttattttcattcacgtcaatatctgatccgcaattgatgaagtatgtgtcttggtgatcgt---atccgagtgagggaaattgtaa 39544805  T
Q  1199 tgatgagaattgaagaagaaaagttagtagaacgatagactgttgaattgcca-tggggagagagttgataattgtgtttgt 1279  Q
    ||||| |||||||||||||||||  |||| || |||||  ||||||| ||||| ||| ||||||||||||||||||||||||    
T  39544806 tgatgcgaattgaagaagaaaagcaagtaaaatgatagtgtgttgaactgccattggagagagagttgataattgtgtttgt 39544887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 124; E-Value: 4e-63
Query Start/End: Original strand, 23 - 202
Target Start/End: Original strand, 39520837 - 39521016
Alignment:
Q  23 aggaagactaacttttgaatccatatcatccgggggaattttactagattgttcaatcacttccattagttctagcccatttaaaaatgcattcggtaca 122  Q
    |||||||||||| |||||||||| ||||||   |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||    
T  39520837 aggaagactaacctttgaatccaaatcatcgaagggaatttcactagattgttcaatcactttcattagttctagcccatttaaaaatgctttcggtaca 39520936  T
Q  123 aaatccgacacattaggttgtacggtaaccttcagtttcccagagccatcggagcgaaccacaaaatcataatgataagg 202  Q
    ||||||||||||||||||||||||||||| ||||| ||||||||| |||||||  |||||||||||||||||| ||||||    
T  39520937 aaatccgacacattaggttgtacggtaacattcaggttcccagaggcatcggattgaaccacaaaatcataataataagg 39521016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 115; E-Value: 9e-58
Query Start/End: Original strand, 693 - 1283
Target Start/End: Original strand, 39525007 - 39525598
Alignment:
Q  693 tcggggatgaaatgagtggggagtataaagagttccattgcattaacaaacgcaaatgatgaggtttgaggtgtgaaagtgattttgaatcttttacggg 792  Q
    |||||||| ||||||   ||||| ||||||||||| ||||||||| |||| ||||||||||   ||||||||||||| |||||||||||| |||| | |     
T  39525007 tcggggattaaatgaacagggagcataaagagttctattgcattagcaaaggcaaatgatgctttttgaggtgtgaacgtgattttgaatttttttctga 39525106  T
Q  793 tgattttaaagaaatattctttaattgaaagggagtttat------------atcaaaattttgtaacagagagaaacctggaaaggaaacgttgaattt 880  Q
    ||||||||| | |||| ||||| | | || | |||||  |            ||| |||||||||||||||  |||||| || |  |||||| |||||||    
T  39525107 tgattttaaggtaatactcttttactaaaggagagttggtggtgttttttgcatcgaaattttgtaacagaatgaaaccagggactgaaacggtgaattt 39525206  T
Q  881 tgcagtggaaagattagttggtaaagagaatagaaagaaatggaaacgtaccatgtaagtgttgtttggtacggttttgaattcgtagaaagacttggaa 980  Q
    |||||||||||| |||  |||| ||||||||  |||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||| | ||||    
T  39525207 tgcagtggaaaggttaagtggtgaagagaatgaaaagaaatggaaacgtaccatgtaggtgttgtttggtacggttttgaactcgtataaagattcggaa 39525306  T
Q  981 gggaatataattgctgtttggtagagaggtgaaagtggtgttgatagtgatgatgattgacttgttactttggagcttttgctgaaaactgttttcggat 1080  Q
     | |||||  |||||||||||||||||||||||             |   |||||||||||| ||| || |||||||||||||||||  |||||| || |    
T  39525307 tgaaatatccttgctgtttggtagagaggtgaa------------ggcactgatgattgactggtttctatggagcttttgctgaaacttgttttagggt 39525394  T
Q  1081 aagtagggtttgattcaccaatataaacgttgttactttcagtaacatcaa------aatctgatccgcaattgatgaagtatgtgtgttggggattata 1174  Q
    |  | ||||||||||| ||||||||||| || |||||||||||||||  ||       ||||||||| ||| ||||||||||| ||| ||   | | ||     
T  39525395 agttggggtttgattccccaatataaactttattactttcagtaacagtaacgttgctatctgatccacaactgatgaagtatatgtctt---gttcatc 39525491  T
Q  1175 taatccaagcgagggaaattgtaatgatgagaattgaagaagaaaagttagtagaacgatagactgttgaattgccatggggagagagttgataattgtg 1274  Q
      |||| |||||||| || | ||||||||||||||||| ||||||||  ||||  | |||||| ||||||||||||||  |||||||||||| |||| ||    
T  39525492 gtatccgagcgaggggaagtataatgatgagaattgaataagaaaagcaagtaagatgatagagtgttgaattgccat--ggagagagttgaaaattatg 39525589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 94; E-Value: 3e-45
Query Start/End: Original strand, 289 - 552
Target Start/End: Original strand, 39524606 - 39524866
Alignment:
Q  289 taaaattgtcgcaaaagtgaagcctaaggaaatgatcagtattcttcttctccacaggaacactccaacttatgtttaaaccgtttgaaccatttttact 388  Q
    ||||| |||| ||||| |||||| |||||||||||||  |||||||||   |||||||||||||||||||||||||||||||| ||||||||||   |||    
T  39524606 taaaaatgtcacaaaaatgaagcataaggaaatgatctatattcttct---ccacaggaacactccaacttatgtttaaaccgattgaaccattaacact 39524702  T
Q  389 ctctttgccactattataaagagcgtctggaccaatatgtatatttgaatttggaccatcagattcatcacctgcagtgcgtataatatcacctccaaag 488  Q
    | ||||| || | ||||||| |   |||||||| || | | |||||||||||| | || |||||||||||  |||||||||| ||||||||||| |||||    
T  39524703 cactttggcagttttataaacaatatctggacctatgtatttatttgaatttgaatcaacagattcatcatttgcagtgcgtttaatatcaccttcaaag 39524802  T
Q  489 taaccattcttagcgttatgtggattagtgatgtaactgtcatctggtagccactttcttgata 552  Q
     |||||||||||||||| || |||| ||| || || ||||||||||||| ||| | ||||||||    
T  39524803 gaaccattcttagcgttttggggatcagttatatatctgtcatctggtaaccattctcttgata 39524866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 93; E-Value: 1e-44
Query Start/End: Original strand, 287 - 537
Target Start/End: Original strand, 39543900 - 39544147
Alignment:
Q  287 attaaaattgtcgcaaaagtgaagcctaaggaaatgatcagtattcttcttctccacaggaacactccaacttatgtttaaaccgtttgaaccattttta 386  Q
    ||||||| |||| || || ||||||||||||||||||||| || |||| |   | ||||||||||||||||||||||||||||| || |||||  ||||     
T  39543900 attaaaaatgtcacagaaatgaagcctaaggaaatgatcaatactctttt---caacaggaacactccaacttatgtttaaacctttagaaccgcttttg 39543996  T
Q  387 ctctctttgccactattataaagagcgtctggaccaatatgtatatttgaatttggaccatcagattcatcacctgcagtgcgtataatatcacctccaa 486  Q
    ||||||||| || | | ||||| |||||| ||| |||||| |||||||||||||||||| ||| ||  || |  |||||||||| |||| ||| || |||    
T  39543997 ctctctttggcagtttcataaacagcgtccggagcaatatatatatttgaatttggaccttcatatgtattatttgcagtgcgtttaatttcatctgcaa 39544096  T
Q  487 agtaaccattcttagcgttatgtggattagtgatgtaactgtcatctggta 537  Q
    || |||||||||||||||| ||||||||||| || ||||||||||||||||    
T  39544097 aggaaccattcttagcgttttgtggattagttatataactgtcatctggta 39544147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 89; E-Value: 3e-42
Query Start/End: Original strand, 86 - 202
Target Start/End: Original strand, 39575542 - 39575658
Alignment:
Q  86 cattagttctagcccatttaaaaatgcattcggtacaaaatccgacacattaggttgtacggtaaccttcagtttcccagagccatcggagcgaaccaca 185  Q
    |||||||||||| |||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||  ||||||||    
T  39575542 cattagttctagtccatttaaaaatgcgttcggtacaaaatccaacacattaggttgtacggtaaccttcagtttcccagaggcatcggattgaaccaca 39575641  T
Q  186 aaatcataatgataagg 202  Q
    |||||||||| ||||||    
T  39575642 aaatcataataataagg 39575658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 86; E-Value: 2e-40
Query Start/End: Original strand, 23 - 120
Target Start/End: Original strand, 39510579 - 39510676
Alignment:
Q  23 aggaagactaacttttgaatccatatcatccgggggaattttactagattgttcaatcacttccattagttctagcccatttaaaaatgcattcggta 120  Q
    |||||||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39510579 aggaagactaaccttcgaatccatatcatccgggggaatttcactagattgttcaatcacttccattagttctagcccatttaaaaatgcattcggta 39510676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 83; E-Value: 1e-38
Query Start/End: Original strand, 341 - 553
Target Start/End: Original strand, 39510912 - 39511121
Alignment:
Q  341 cacaggaacactccaacttatgtttaaaccgtttgaaccatttttactctctttgccactattataaagagcgtctggaccaatatgtatatttgaattt 440  Q
    |||||||||||||||||||||||||||||| |||||||| |||  |||||||| |||| | ||||||| |   ||||||||||||| |||| ||||||||    
T  39510912 cacaggaacactccaacttatgtttaaaccttttgaaccgtttgcactctcttggccagttttataaacaatatctggaccaatatatatacttgaattt 39511011  T
Q  441 ggaccatcagattcatcacctgcagtgcgtataatatcacctccaaagtaaccattcttagcgttatgtggattagtgatgtaactgtcatctggtagcc 540  Q
    ||||||||||||||||||  ||||| | || ||||||||   |||||| ||||| |||| || || ||||||||||| ||||| ||||||||| ||| ||    
T  39511012 ggaccatcagattcatcatttgcagcgtgtttaatatca---ccaaaggaaccaatcttcgcattttgtggattagttatgtatctgtcatctcgtaacc 39511108  T
Q  541 actttcttgataa 553  Q
    | | |||||||||    
T  39511109 attctcttgataa 39511121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 74; E-Value: 3e-33
Query Start/End: Original strand, 717 - 1013
Target Start/End: Original strand, 39576179 - 39576487
Alignment:
Q  717 ataaagagttccattgcattaacaaacgcaaatgatgaggtttgaggtgtgaaagtgattttgaatcttttacgggtgattttaaagaaatattctttaa 816  Q
    ||||||||||| |||||||||||||||||||||||||| ||||||||||||||  |||||||||||||||| |   ||||||||| | |||| ||||| |    
T  39576179 ataaagagttctattgcattaacaaacgcaaatgatgatgtttgaggtgtgaatatgattttgaatctttttctaatgattttaacgtaatactctttta 39576278  T
Q  817 ttgaa--ag-------ggagtttatatca---aaattttgtaacagagagaaacctggaaaggaaacgttgaattttgcagtggaaagattagttggtaa 904  Q
     | ||  ||       || ||||  | |    ||||| |||||||||  |||||| |||| ||||| ||||||||||||||||||||| ||||||||| |    
T  39576279 ctaaagcagatttggtggtgttttcagcgttgaaattatgtaacagaaggaaaccaggaacggaaatgttgaattttgcagtggaaagtttagttggtga 39576378  T
Q  905 agagaatagaaagaaatggaaacgtaccatgtaagtgttgtttggtacggttttgaattcgtagaaagacttggaagggaatataattgctgtttggtag 1004  Q
    |||||||  ||||||| ||||||||||||| |||||||||||||||| |||    ||||||||| | || |  ||| |||| ||  |||||||||||||     
T  39576379 agagaatgaaaagaaacggaaacgtaccatataagtgttgtttggtatggtagaaaattcgtaggaggattcagaatggaaaattcttgctgtttggtaa 39576478  T
Q  1005 agaggtgaa 1013  Q
    |||||||||    
T  39576479 agaggtgaa 39576487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 74; E-Value: 3e-33
Query Start/End: Original strand, 73 - 202
Target Start/End: Original strand, 39580071 - 39580200
Alignment:
Q  73 gttcaatcacttccattagttctagcccatttaaaaatgcattcggtacaaaatccgacacattaggttgtacggtaaccttcagtttcccagagccatc 172  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||| | ||||||||||| || ||||||||||| |   | ||||  |||    
T  39580071 gttcaatcactttcattagttctagcccatttaaaaatgcattcggtacaaaatcggtcacattaggttttatggtaaccttcaataggctagagttatc 39580170  T
Q  173 ggagcgaaccacaaaatcataatgataagg 202  Q
    ||| ||||||||||||||||||| ||||||    
T  39580171 ggaacgaaccacaaaatcataataataagg 39580200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 69; E-Value: 3e-30
Query Start/End: Original strand, 837 - 1013
Target Start/End: Original strand, 39511420 - 39511596
Alignment:
Q  837 aaattttgtaacagagagaaacctggaaaggaaacgttgaattttgcagtggaaagattagttggtaaagagaatagaaagaaatggaaacgtaccatgt 936  Q
    |||||||||||||||  |||||| ||||  |||||  ||||||||||||||||||| |||||||||  |||||||  || |||||||||||||||||| |    
T  39511420 aaattttgtaacagaatgaaaccaggaactgaaacagtgaattttgcagtggaaagtttagttggtgtagagaatgaaaggaaatggaaacgtaccatat 39511519  T
Q  937 aagtgttgtttggtacggttttgaattcgtagaaagacttggaagggaatataattgctgtttggtagagaggtgaa 1013  Q
    | ||||||||||| | |||||||||||||||  |||| | |||| |||| ||  |||| ||||||||||||| ||||    
T  39511520 aggtgttgtttgggatggttttgaattcgtaccaagattcggaacggaaaatccttgcagtttggtagagagatgaa 39511596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 1196 - 1261
Target Start/End: Original strand, 39511767 - 39511832
Alignment:
Q  1196 taatgatgagaattgaagaagaaaagttagtagaacgatagactgttgaattgccatggggagaga 1261  Q
    ||||||||||||||||||||||||| |||||| || ||||||||||||||||| ||| ||||||||    
T  39511767 taatgatgagaattgaagaagaaaaattagtaaaatgatagactgttgaattgtcattgggagaga 39511832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 687 - 787
Target Start/End: Original strand, 39511258 - 39511358
Alignment:
Q  687 actgattcggggatgaaatgagtggggagtataaagagttccattgcattaacaaacgcaaatgatgaggtttgaggtgtgaaagtgattttgaatcttt 786  Q
    ||||| || ||||| ||||||  |||||| | ||||||||| ||||| |||||||| || | ||||||  ||||||||||||||||||||||||||||||    
T  39511258 actgaatcagggattaaatgaacggggagcacaaagagttctattgcgttaacaaatgcgagtgatgatttttgaggtgtgaaagtgattttgaatcttt 39511357  T
Q  787 t 787  Q
    |    
T  39511358 t 39511358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 333 - 537
Target Start/End: Original strand, 39575795 - 39575993
Alignment:
Q  333 ttcttctccacaggaacactccaacttatgtttaaaccgtttgaaccatttttactctctttgccactattataaagagcgtctggaccaatatgtatat 432  Q
    |||||||| ||||||||||||||||||||| |      | | ||||| ||  |||||||||||||| | ||||||| |   |||||| |||||| |  ||    
T  39575795 ttcttctctacaggaacactccaacttatgct------gctagaaccgttaatactctctttgccagttttataaacaatatctggagcaatatattgat 39575888  T
Q  433 ttgaatttggaccatcagattcatcacctgcagtgcgtataatatcacctccaaagtaaccattcttagcgttatgtggattagtgatgtaactgtcatc 532  Q
    |||||||||||||||||||   ||||  ||||||||||  |||||||||  ||||| | | |||||||||||| ||| ||||||| |  || ||||||||    
T  39575889 ttgaatttggaccatcagacgtatcatttgcagtgcgtggaatatcaccgtcaaaggagcaattcttagcgttttgtagattagttacatatctgtcatc 39575988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 1087 - 1262
Target Start/End: Original strand, 39576552 - 39576727
Alignment:
Q  1087 ggtttgattcaccaatataaacgttgttactttcagtaacatcaaaatctgatccgcaattgatgaagtatgtgtgttggggattatataatccaagcga 1186  Q
    |||||||||||||||||||||  || ||| ||||| | || || | ||||||||| ||||||||||||||||| | |||  |||  |||   || || |     
T  39576552 ggtttgattcaccaatataaagattcttattttcattcacgtcgatatctgatccacaattgatgaagtatgtctcttgatgatcgtat---ccgagtgc 39576648  T
Q  1187 gggaaattgtaatgatgagaattgaag---aagaaaagttagtagaacgatagactgttgaattgccatggggagagag 1262  Q
     || || |||| |||||||||||||||   ||||||||  |||| || |||||| |||||||||||||| |||||||||    
T  39576649 agggaagtgtagtgatgagaattgaagaagaagaaaagccagtaaaatgatagagtgttgaattgccattgggagagag 39576727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 119
Target Start/End: Original strand, 39524376 - 39524421
Alignment:
Q  74 ttcaatcacttccattagttctagcccatttaaaaatgcattcggt 119  Q
    ||||||||||| ||||||||||||||| |||||||| |||||||||    
T  39524376 ttcaatcactttcattagttctagcccgtttaaaaaagcattcggt 39524421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000008
Query Start/End: Original strand, 879 - 949
Target Start/End: Complemental strand, 3331579 - 3331509
Alignment:
Q  879 tttgcagtggaaagattagttggtaaagagaatagaaagaaatggaaacgtaccatgtaagtgttgtttgg 949  Q
    |||||||||||||| ||| ||||| ||||||||  || ||||||||||||||||||||| |||||||||||    
T  3331579 tttgcagtggaaaggttaattggtgaagagaatgaaaggaaatggaaacgtaccatgtaggtgttgtttgg 3331509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 729 - 773
Target Start/End: Complemental strand, 3331315 - 3331271
Alignment:
Q  729 attgcattaacaaacgcaaatgatgaggtttgaggtgtgaaagtg 773  Q
    |||||||||||||| ||||||||||| ||||||||||||||||||    
T  3331315 attgcattaacaaatgcaaatgatgatgtttgaggtgtgaaagtg 3331271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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