View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13383_low_11 (Length: 401)
Name: NF13383_low_11
Description: NF13383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13383_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 388
Target Start/End: Complemental strand, 43139365 - 43138976
Alignment:
| Q |
1 |
ctatacttatacttatcatttggtccttgcagattta--gaagttgcctctgcccggcttattgtatcatattagctcaccatattataatgaattttaa |
98 |
Q |
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| T |
43139365 |
ctatacttatacttatcatttggtccttgcagatttatagaagttgcctctgcccggcttattgtatcatattagctcaccatattataatgaattttaa |
43139266 |
T |
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| Q |
99 |
gtgttattcatgagttggcttatcccaagctatactaattttacttcatgcagtgacactgaccaataaaatatattgagtgagaagtgagaacagttct |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43139265 |
gtgttattcatgagttggcttatcccaagctatactaattttacttcatgcagtgacactgaccaataaaatatattgagtgagaagtgagaacagttct |
43139166 |
T |
|
| Q |
199 |
ttagatacggggtcttaaaaaatgattaggtagatggaacatttccatcatttggttaagtactaattaaaacgcgttttgttttaatctannnnnnngc |
298 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
43139165 |
ttagatacggggtcttaaaaaatgattaggtagatggaacatttccatcatttggttaagtactaattaaaacgcgttttgttttaatctatttatctgc |
43139066 |
T |
|
| Q |
299 |
aactttaaccttttgtaattcttgtcgttgcccnnnnnnnncgcgttgcaaactcttgctacgtcgtcgtttaaatcacctgatgatgtc |
388 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || ||||| |
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| T |
43139065 |
aactttaaccttttgtaattcttgtcgttgcccaaaaaaaacgcgttgcaaactcttgctacgtcgtcgtttaaatcaccttataatgtc |
43138976 |
T |
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