View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13383_low_12 (Length: 400)
Name: NF13383_low_12
Description: NF13383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13383_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 131 - 388
Target Start/End: Original strand, 46754752 - 46755009
Alignment:
| Q |
131 |
ggccccttgattgtgtaaccaatggttgtctacaataattttccattcttttttctcagtttattttcgtgtacacaacatcgataatctttcccggcat |
230 |
Q |
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| T |
46754752 |
ggccccttgattgtgtaaccaatggttgtctacaacaattttccattcttttttctcagtttattttcgtgtacacaacatcgataatctttcccggcat |
46754851 |
T |
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| Q |
231 |
agctgtatgaggttgacggttaggacaaatattttaggttgataactacacatatataaccttatcaaaatagtaaaaacaatgcatttattctctaaac |
330 |
Q |
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| T |
46754852 |
agctgtatgaggttgacggttaggacaaatattttaggttgataactatacatatataaccttatcaaaatagtaaaaacaatgcatttattctctaaac |
46754951 |
T |
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| Q |
331 |
ggaaatgaaagttggtattgaaattgtaaccgttgaggagtttgggagagcaccaagt |
388 |
Q |
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| T |
46754952 |
ggaaatgaaagttggtattgaaattgtaaccgttgaggagtttgggagagcaccaagt |
46755009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 12 - 88
Target Start/End: Original strand, 46754633 - 46754709
Alignment:
| Q |
12 |
atcatcataggagagtaaatcattagatggctaacaatttgctagacaggtgctttgacttgtgtatgttgtgtata |
88 |
Q |
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| T |
46754633 |
atcatcataggagagtaaatcagtagatggctaacaatttgctagacaggtgctttgacttgtgtatgttgtgtata |
46754709 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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